Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2j06
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    29   0.038
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    28   0.089
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    26   0.27 
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    26   0.27 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   0.63 
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    25   0.83 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   5.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   5.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   7.7  

>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 29.1 bits (62), Expect = 0.038
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = +3

Query: 435 PERVRTRLTKLFQHQNGNTVECTNDFHEFDYLSVMERFEINQYQNMLDQSMKDLFQRHKV 614
           PER R R T    +    T+E   +FH   YL+   R EI     + ++ +K  FQ  ++
Sbjct: 6   PERKRGRQT----YTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 61

Query: 615 DLQAERNR 638
             + E  R
Sbjct: 62  KWKKENAR 69


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 27.9 bits (59), Expect = 0.089
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 489 TVECTNDFHEFDYLSVMERFEINQYQNMLDQSMKDLFQRHKVDLQAE 629
           T+E   +FH   YL+   R EI     + ++ +K  FQ  ++ L+ E
Sbjct: 20  TLELEKEFHYNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKE 66


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 20/67 (29%), Positives = 33/67 (49%)
 Frame = +3

Query: 54  ILEIFYSYFILILNTQMVQKLDETHKKSVKADVIILGCSLSGIVAAHKLKRRFGDSMDIV 233
           IL++   Y I  L +   Q+ DET + S   D+ +   ++   +   + +  FG S + V
Sbjct: 58  ILDVRLDYRISCLLSIFKQEFDETERAS--GDLSLGQKTIDLELIGTQAEGIFGSSEECV 115

Query: 234 VLDLAGQ 254
            LDL GQ
Sbjct: 116 ALDLDGQ 122


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 20/67 (29%), Positives = 33/67 (49%)
 Frame = +3

Query: 54  ILEIFYSYFILILNTQMVQKLDETHKKSVKADVIILGCSLSGIVAAHKLKRRFGDSMDIV 233
           IL++   Y I  L +   Q+ DET + S   D+ +   ++   +   + +  FG S + V
Sbjct: 26  ILDVRLDYRISCLLSIFKQEFDETERAS--GDLSLGQKTIDLELIGTQAEGIFGSSEECV 83

Query: 234 VLDLAGQ 254
            LDL GQ
Sbjct: 84  ALDLDGQ 90


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 489 TVECTNDFHEFDYLSVMERFEINQYQNMLDQSMKDLFQRHKVDLQAE 629
           T+E   +FH   YL+   R EI     + ++ +K  FQ  ++  + E
Sbjct: 282 TLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 328


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 489 TVECTNDFHEFDYLSVMERFEINQYQNMLDQSMKDLFQRHKVDLQAE 629
           T+E   +FH   YL+   R EI     + ++ +K  FQ  ++  + E
Sbjct: 20  TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 66


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 322 VMISWLSFSTSSKTTLYLE*LCVCPARSNTTIS 224
           VM+SW+SF  + + T     L +    + TTIS
Sbjct: 256 VMLSWVSFWINHEATSARVALGITTVLTMTTIS 288


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 533 AEIVELVEVIGTFYSVTVLVLEQLGQPSPDSFRGYYDVWK 414
           ++IV   E+  T   + V+ + Q      DSF G  DV+K
Sbjct: 495 SDIVGFTEICSTATPMMVINMLQNLYEQFDSFCGQLDVYK 534


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 6   FFF*ADHGTKYCLHNNILEIFYSYFILI 89
           F+  AD G K  L  NIL     +F+LI
Sbjct: 257 FYLPADSGEKIALCINILLSQTMFFLLI 284


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,901
Number of Sequences: 438
Number of extensions: 3910
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)