Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2j05
         (712 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    25   0.61 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   4.3  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   9.9  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   9.9  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   9.9  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   9.9  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +1

Query: 343 DDIKMIRDPPAMHKPDNTNGQQDENKYSLSNNVASSTGGARLCAQCGKVIT 495
           DD+ +++  P +H P  T           SN + +  G   LCA  G V T
Sbjct: 23  DDVLLVKSEPQLHSPCATG----------SNGLPAGAGSNLLCASNGLVTT 63


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 693 EGWNNFIARHTIA 655
           EGW + +ARH +A
Sbjct: 363 EGWIHHLARHAVA 375


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 510 EEESLSDDLPALRAKPRSSRRARHV 436
           EE+S S++  +L   PR +++A  V
Sbjct: 162 EEDSRSNEDTSLHPSPRITKKANSV 186


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 382 KPDNTNGQQDENKYSLSNNVASS 450
           +PD  N Q  +N     NN+A +
Sbjct: 314 QPDYLNSQTTQNHMQAMNNMAGT 336


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 510 EEESLSDDLPALRAKPRSSRRARHV 436
           EE+S S++  +L   PR +++A  V
Sbjct: 110 EEDSRSNEDTSLHPSPRITKKANSV 134


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 510 EEESLSDDLPALRAKPRSSRRARHV 436
           EE+S S++  +L   PR +++A  V
Sbjct: 293 EEDSRSNEDTSLHPSPRITKKANSV 317


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,964
Number of Sequences: 336
Number of extensions: 3431
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)