Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2j05
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    38   0.002
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      36   0.004
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    32   0.070
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    31   0.16 
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy...    29   0.87 
SPBC16G5.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.5  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    27   2.0  

>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
 Frame = +1

Query: 460 ARLCAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLY------YKADLMLC 621
           +++CA CG+VI+ ++ ++A+   +H +C +C  C+     V SK +          + LC
Sbjct: 113 SKICASCGQVISGQY-VRALGNIYHLECFRCHDCN---SLVASKFFPIDDPTLNKQVPLC 168

Query: 622 KRDYLRLFGATGNCVACNKVIPAF 693
           + DY R       C +C   +  +
Sbjct: 169 ETDYFRRLDLL--CASCGMALRGY 190


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 21/72 (29%), Positives = 27/72 (37%)
 Frame = +1

Query: 469 CAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCKRDYLRLFG 648
           C  CG  +    ++ A  +  H  C KC  C   L  VG   YY+     C  DY   F 
Sbjct: 258 CHSCGGSLRAGRIISASGKKLHPQCFKCDTCSQNLEHVG--FYYREGKFYCHLDYHEQF- 314

Query: 649 ATGNCVACNKVI 684
            +  C  C   I
Sbjct: 315 -SPRCKHCKTPI 325



 Score = 29.9 bits (64), Expect = 0.38
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 469 CAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVG 585
           C +C K I     +K  +  +H  C  CG C+  LG+ G
Sbjct: 378 CKKCRKPILG-ISVKGSDGEYHSQCWTCGACNALLGDEG 415


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 32.3 bits (70), Expect = 0.070
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +1

Query: 448 STGGARLCAQCGKVITERFL-LKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKAD 609
           S+ G+ +C +CG+    R   +      WH+DC  C  CD  L      L   +D
Sbjct: 12  SSKGSTVCFRCGQAFQRRETPISFGGHMWHKDCFCCTKCDKGLEHSDQMLVQTSD 66


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +1

Query: 343 DDIKMIRDPP-AMHKPDNTNGQQDENKYSLSNNVASSTGGARLCAQCGKVITERFLLKAM 519
           + I  + DP  + H+  + NG +  +   +   V +STG   L   C  + T++F+ +  
Sbjct: 528 NSILSVYDPNVSQHRVPSINGNESHSNVHVIRQVVNSTGPVSLDQSCNLLPTDQFVERRN 587

Query: 520 ERFWHED 540
             F+ +D
Sbjct: 588 FMFYSDD 594


>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 370

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -2

Query: 405 LTVCIVGFMHGRWVSNHFDIVT 340
           +T+CIV F+HGR + + ++ +T
Sbjct: 284 MTICIVAFLHGRGLEDWYNWIT 305


>SPBC16G5.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 126

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 559 CDCRLGEVGSKLYYKADLMLCKRDYLRLFGATGN 660
           CDC + EV S     AD +    +YLR   A  N
Sbjct: 62  CDCPISEVPSAKQKLADSLFTSHEYLRQTSAEAN 95


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +1

Query: 469 CAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRL 573
           C +C + +     +    + WH DC KC  C+ +L
Sbjct: 24  CIKCWESVPSTSQVWFGGKCWHSDCFKCVNCNKKL 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,924,718
Number of Sequences: 5004
Number of extensions: 57606
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)