Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2j05
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   0.53 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.0  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   6.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.6  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   8.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.7  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   8.7  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   8.7  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = -2

Query: 312 LIDRVSFKELSCKTPALLVFNP*KSQVKTHLMNNHSTKSLSIKLNTNKTDVFNLK 148
           ++DR S       +P+LL   P +   K    NNH     + KLN  + +  N K
Sbjct: 32  IVDRRSPSSSRSPSPSLLTSQPHQDHNKEKSKNNHHCNQDTEKLNQLEIESDNSK 86


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 693 EGWNNFIARHTIA 655
           EGW + +ARH +A
Sbjct: 367 EGWIHHLARHAVA 379


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 2   TRTRMFVLAVRVLSSASIIKLY 67
           T  RMFVLA  + +  +I +LY
Sbjct: 250 TDKRMFVLAASIKAGYTIDRLY 271


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 453 RRARHVVTQTVLIFILLTVCIVGFMHG 373
           + + + VTQ +LI ++L   IVG + G
Sbjct: 32  KNSPYTVTQAILIALVLGSIIVGTVIG 58


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 334 CESDDIKMIRDPPAMHKPDNTN 399
           C +DD  M+ D P +     TN
Sbjct: 463 CHADDAYMVVDTPFLASTTTTN 484


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 427 LSNNVASSTGGARLCAQCGKVITERFLLKAME 522
           LS++ AS  GG  +   C KV  E   ++  E
Sbjct: 228 LSHSNASVAGGMEMILLCEKVAKEDIQVRFFE 259


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 427 LSNNVASSTGGARLCAQCGKVITERFLLKAME 522
           LS++ AS  GG  +   C KV  E   ++  E
Sbjct: 228 LSHSNASVAGGMEMILLCEKVAKEDIQVRFFE 259


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 334 CESDDIKMIRDPPAMHKPDNTN 399
           C +DD  M+ D P +     TN
Sbjct: 463 CHADDAYMVVDTPFLASTTTTN 484


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,481
Number of Sequences: 438
Number of extensions: 3971
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)