Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2j04
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    34   0.018
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom...    34   0.018
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch...    34   0.018
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    30   0.38 
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    29   0.51 
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    29   0.67 
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    29   0.89 
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    28   1.2  
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    28   1.2  
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    28   1.6  
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    28   1.6  
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    27   2.7  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    27   3.6  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    26   6.3  
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    26   6.3  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    25   8.3  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.3  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    25   8.3  

>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 34.3 bits (75), Expect = 0.018
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +2

Query: 506 YDTSVFKRTIIMEWDLICDRKWLTSFTQTLFQLGTLFGSVFFGMASDRFGRKTL 667
           Y  SVF  +I    +     + L +   TL+ LG LFG++ F   S++FGR+ +
Sbjct: 57  YGDSVFAPSISNIAEQFHASRTLVTLGATLYTLGILFGNLIFAPLSEQFGRRPI 110


>SPBPB2B2.16c |||MFS family membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 34.3 bits (75), Expect = 0.018
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +2

Query: 506 YDTSVFKRTIIMEWDLICDRKWLTSFTQTLFQLGTLFGSVFFGMASDRFGRKTL 667
           Y  SVF  +I    +     + L +   TL+ LG LFG++ F   S++FGR+ +
Sbjct: 57  YGDSVFAPSISNIAEQFHASRTLVTLGATLYTLGILFGNLIFAPLSEQFGRRPI 110


>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 34.3 bits (75), Expect = 0.018
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +2

Query: 506 YDTSVFKRTIIMEWDLICDRKWLTSFTQTLFQLGTLFGSVFFGMASDRFGRKTL 667
           Y  SVF  +I    +     + L +   TL+ LG LFG++ F   S++FGR+ +
Sbjct: 57  YGDSVFAPSISNIAEQFHASRTLVTLGATLYTLGILFGNLIFAPLSEQFGRRPI 110


>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 602 LGTLFGSVFFGMASDRFGRK 661
           +GT+ G + FG  SDRFGRK
Sbjct: 126 VGTIVGQLSFGWYSDRFGRK 145


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 20/89 (22%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
 Frame = +1

Query: 142  ISILKKSLTCVTLNVTATLTR-KIFLIFLIQYIHTVPILILFMTYFYGVEGK*NRGHAFA 318
            I +   S T   +N+   + + ++ LI LI ++ ++ +  ++ T+ Y   G     +AF 
Sbjct: 1216 IGLFISSPTIFVINIFILMNQERLNLISLITWMFSIGVFWIW-TFIYSEVGP---SYAFH 1271

Query: 319  KERSHSKSHRMFWKISIVLMFSCILSKIS 405
            K  S +     FW ++++ +  C+L + S
Sbjct: 1272 KSASRTCQTFGFWCVTVLTIALCLLPRFS 1300


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 25/96 (26%), Positives = 44/96 (45%)
 Frame = +1

Query: 220 FLIQYIHTVPILILFMTYFYGVEGK*NRGHAFAKERSHSKSHRMFWKISIVLMFSCILSK 399
           FL   +  +PIL      FY + G  +  H+F   +SH     ++  I    M + +L++
Sbjct: 319 FLFALLSIIPILFAL---FYSISG--STLHSFRSIKSHLVLSALYLYIGCFHMHTQVLNR 373

Query: 400 ISGRIPSNGHHIFIAKSVIYLCKYEQRNLSLFGSYI 507
           +S  +P    +  +A + +Y    + RNL  FG  I
Sbjct: 374 MSSALPL--LYWSMAHATLYA---KSRNLKAFGHCI 404


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +2

Query: 503 IYDTSVFKRTIIMEWDLICDRKWLTSFTQTLFQLGTLFGSVFFGMASDRFGRKTL 667
           +Y +SVF  +I    +   + + L     TL+ +G + G + F   S+ +GR+ L
Sbjct: 53  MYGSSVFMPSIPELCEKFGEPETLVVLGATLYVIGVMLGPLIFSPLSELYGRRPL 107


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 587 QTLFQLGTLFGSVFFGMASDRFGRK 661
           Q++F LG   G +F G  SD  GRK
Sbjct: 123 QSMFVLGVALGPLFLGPLSDLLGRK 147


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 602 LGTLFGSVFFGMASDRFGRK 661
           +G +FG + FG   D FGRK
Sbjct: 99  IGNVFGQILFGFMGDFFGRK 118


>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 602 LGTLFGSVFFGMASDRFGRK 661
           +G +FG + FG   D FGRK
Sbjct: 104 IGNIFGQLLFGFMGDFFGRK 123


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 602 LGTLFGSVFFGMASDRFGRK 661
           +G +FG + FG   D FGRK
Sbjct: 104 IGNIFGQLMFGFMGDFFGRK 123


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = +2

Query: 521 FKRTIIMEWDLICDRKWLTSFTQTLF----QLGTLFGSVFFGMASDRFGRK 661
           F+      +D I D+  L+S  Q L      +G+LFG +     +DRFG++
Sbjct: 40  FRERYADRYDPITDQYSLSSARQGLLTGMVNVGSLFGCIISSPIADRFGKR 90


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 177 SKRHCNIDT*NFSDIFDTIHTYRTYLNIVYDVFLW 281
           SK++C+    N   I   +H Y TY++   DV LW
Sbjct: 15  SKKYCDYVREN--GIMQFLHMYDTYISKKQDVLLW 47


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -1

Query: 414 NATGNFTKNTTKHKYN*YFPKHPMTF*MRSFFGEGVAPILF 292
           +A GN + +TTK K +  +    +T+ ++   G+G   ++F
Sbjct: 756 HALGNASNSTTKEKSHIPYRNSKLTYLLKYSLGKGAKTLMF 796


>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/44 (27%), Positives = 27/44 (61%)
 Frame = +3

Query: 198 DT*NFSDIFDTIHTYRTYLNIVYDVFLWRRGKIK*GPRLRQRKI 329
           D+  F+D+FD  + YR Y + ++  +  ++G++K G   ++ K+
Sbjct: 30  DSVGFTDLFDAPNIYRVY-SWLHKHYNQKKGQLKHGVSRQKNKL 72


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +2

Query: 509 DTSVFKRTI-IMEWDLICDRK 568
           DT ++ R I ++EWD +CD K
Sbjct: 47  DTLLWNRFINVIEWDKLCDEK 67


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -1

Query: 573 NHFLSHIKSHSIIIVRLKTDVS 508
           N+F++ +KS S++IV+ +T  S
Sbjct: 320 NYFMTDVKSSSVVIVQSETSCS 341


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 602 LGTLFGSVFFGMASDRFGRK 661
           +G + G + FG   D FGRK
Sbjct: 94  IGNIMGQLLFGFLGDFFGRK 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,169,778
Number of Sequences: 5004
Number of extensions: 70675
Number of successful extensions: 182
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)