Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2j01
         (683 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   1.8  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   1.8  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    23   1.8  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   4.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.1  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +2

Query: 392 PTSDIASNILNE-QVPKPVSSNYVNSTISNPTFDVNLQPLSEPSSAHTPVPEEYQPLPDS 568
           P+SD + ++ +  Q P+   + + ++ I  P F  N  PL+ P+S     P+  +   D 
Sbjct: 68  PSSDTSQDLQHSYQSPQTQPARFYSTPIV-PHFAYNHNPLTPPNSEPLVSPKSEKEEKDM 126

Query: 569 SSSI 580
            +++
Sbjct: 127 ETTL 130


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = -1

Query: 407 QYQMWVAPPLHHHSQQTKH 351
           + QMW     HHHS    H
Sbjct: 41  EQQMWEPQMWHHHSHMPPH 59


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = -1

Query: 407 QYQMWVAPPLHHHSQQTKH 351
           + QMW     HHHS    H
Sbjct: 41  EQQMWEPQMWHHHSHMPPH 59


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 462 TQQSQIQHLMLTYNHSQNLHQHILQ 536
           T  S + H +   NH  +  QH+LQ
Sbjct: 213 TDYSSLTHSLAASNHLLSSGQHLLQ 237


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +2

Query: 464  STISNPTFD-VNLQPLSEPSSAHTPVPEEYQP 556
            ST + P +      P   P+S   P+PEE +P
Sbjct: 1362 STTNYPEWQPTEWHPPIPPTSEKPPLPEELKP 1393


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,982
Number of Sequences: 336
Number of extensions: 3824
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)