Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2i20
(731 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 130 2e-31
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 84 2e-17
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 64 3e-11
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 41 2e-04
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 34 0.018
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 30 0.30
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 29 0.52
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 28 1.2
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 28 1.6
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 27 2.1
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 27 2.8
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 27 2.8
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po... 27 2.8
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 6.4
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 26 6.4
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|... 26 6.4
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 130 bits (314), Expect = 2e-31
Identities = 76/170 (44%), Positives = 106/170 (62%), Gaps = 2/170 (1%)
Frame = +1
Query: 223 DEDTNEIILVNEETKELDLNHGRIGKIENL--EHLKKLERLYLRWNLIKKIEGLEMLQSL 396
D D + + V ++ ++L RI + +L E K L+ L LR N IKKIE + ++L
Sbjct: 27 DADEDLLDDVPDDVDCVELIQSRIQSMASLGLERFKNLQSLCLRQNQIKKIESVP--ETL 84
Query: 397 VELELYDNQIVVIENLDSLVNLEILDLSFNRIKEITGLEKLLNIKKLFLSSNKITEIKNV 576
EL+LYDN IV IENLD++ NL LDLSFN IK I + L ++ LF N+I I+N+
Sbjct: 85 TELDLYDNLIVRIENLDNVKNLTYLDLSFNNIKTIRNINHLKGLENLFFVQNRIRRIENL 144
Query: 577 NHLPNLELLELGDNRIREIKNLEGLRTLKQLYLGKNKISKIQNLEDLTNL 726
L L LELG N+IR I+NL+ L L++L++GKNKI+K +N E L L
Sbjct: 145 EGLDRLTNLELGGNKIRVIENLDTLVNLEKLWVGKNKITKFENFEKLQKL 194
Score = 108 bits (260), Expect = 7e-25
Identities = 64/161 (39%), Positives = 93/161 (57%), Gaps = 1/161 (0%)
Frame = +1
Query: 250 VNEETKELDLNHGRIGKIENLEHLKKLERLYLRWNLIKKIEGLEMLQSLVELELYDNQIV 429
V E ELDL I +IENL+++K L L L +N IK I + L+ L L N+I
Sbjct: 80 VPETLTELDLYDNLIVRIENLDNVKNLTYLDLSFNNIKTIRNINHLKGLENLFFVQNRIR 139
Query: 430 VIENLDSLVNLEILDLSFNRIKEITGLEKLLNIKKLFLSSNKITEIKNVNHLPNLELLEL 609
IENL+ L L L+L N+I+ I L+ L+N++KL++ NKIT+ +N L L LL +
Sbjct: 140 RIENLEGLDRLTNLELGGNKIRVIENLDTLVNLEKLWVGKNKITKFENFEKLQKLSLLSI 199
Query: 610 GDNRIREIKNLEGL-RTLKQLYLGKNKISKIQNLEDLTNLE 729
NRI + +NL L L++LY+ N ++ +E L NLE
Sbjct: 200 QSNRITQFENLACLSHCLRELYVSHNGLTSFSGIEVLENLE 240
Score = 105 bits (252), Expect = 7e-24
Identities = 67/171 (39%), Positives = 95/171 (55%), Gaps = 23/171 (13%)
Frame = +1
Query: 271 LDLNHGRIGKIENLEHLKKLERLYLRWNLIKKIEGLEMLQSLVELELYDNQIVVIENLDS 450
LDL+ I I N+ HLK LE L+ N I++IE LE L L LEL N+I VIENLD+
Sbjct: 109 LDLSFNNIKTIRNINHLKGLENLFFVQNRIRRIENLEGLDRLTNLELGGNKIRVIENLDT 168
Query: 451 LVNLEILDLSFNRIKEITGLEKLLNIKKLFLSSNKITEIKN------------VNH---- 582
LVNLE L + N+I + EKL + L + SN+IT+ +N V+H
Sbjct: 169 LVNLEKLWVGKNKITKFENFEKLQKLSLLSIQSNRITQFENLACLSHCLRELYVSHNGLT 228
Query: 583 -------LPNLELLELGDNRIREIKNLEGLRTLKQLYLGKNKISKIQNLED 714
L NLE+L++ +N I+ + L GL+ L +L+ N++S Q +ED
Sbjct: 229 SFSGIEVLENLEILDVSNNMIKHLSYLAGLKNLVELWASNNELSSFQEIED 279
Score = 41.1 bits (92), Expect = 2e-04
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Frame = +1
Query: 271 LDLNHGRIGKIENLEHLKK-LERLYLRWNLIKKIEGLEMLQSLVELELYDNQIVVIENLD 447
L + RI + ENL L L LY+ N + G+E+L++L L++ +N I + L
Sbjct: 197 LSIQSNRITQFENLACLSHCLRELYVSHNGLTSFSGIEVLENLEILDVSNNMIKHLSYLA 256
Query: 448 SLVNLEILDLSFNRIKEITGLE-KLLNIKKL 537
L NL L S N + +E +L +KKL
Sbjct: 257 GLKNLVELWASNNELSSFQEIEDELSGLKKL 287
Score = 34.7 bits (76), Expect = 0.014
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +1
Query: 265 KELDLNHGRIGKIENLEHLKKLERLYLRWNLIKKIEGLEMLQSLVELELYDNQIVVIENL 444
+EL ++H + +E L+ LE L + N+IK + L L++LVEL +N++ + +
Sbjct: 218 RELYVSHNGLTSFSGIEVLENLEILDVSNNMIKHLSYLAGLKNLVELWASNNELSSFQEI 277
Query: 445 -DSLVNLEILD 474
D L L+ L+
Sbjct: 278 EDELSGLKKLE 288
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 84.2 bits (199), Expect = 2e-17
Identities = 45/155 (29%), Positives = 89/155 (57%), Gaps = 2/155 (1%)
Frame = +1
Query: 268 ELDLNHGRIGKIENLEHL-KKLERLYLRWNLIKKIEGLEMLQSLVELELYDNQIVVIENL 444
+LD++ + + L L +E L L N I + G + ++ +L +N++ + +
Sbjct: 607 QLDISRRHLDSLIGLSELCPSIEELTLEGNEIAYLTGCPV--TIRDLNAVENRLSSLTSF 664
Query: 445 DSLVNLEILDLSFNRIKEITGLEKLLNIKKLFLSSNKITEIKNVNHLPNLELLELGDNRI 624
+L+NL+ LD+S+N+++++TGL L+++++L + SN + + + HL L L +NRI
Sbjct: 665 SNLLNLQYLDISYNQLEDLTGLSSLIHLRELKVDSNHLWSLDGIQHLDGLLKLSACNNRI 724
Query: 625 REIK-NLEGLRTLKQLYLGKNKISKIQNLEDLTNL 726
+E+ L L++L LG N+I +I+ + L NL
Sbjct: 725 KELSFTNSNLHRLEELLLGNNEIEEIEEISSLQNL 759
Score = 67.7 bits (158), Expect = 2e-12
Identities = 39/147 (26%), Positives = 82/147 (55%), Gaps = 1/147 (0%)
Frame = +1
Query: 265 KELDLNHGRIGKIENLEHLKKLERLYLRWNLIKKIEGLEMLQSLVELELYDNQIVVIENL 444
++L+ R+ + + +L L+ L + +N ++ + GL L L EL++ N + ++ +
Sbjct: 649 RDLNAVENRLSSLTSFSNLLNLQYLDISYNQLEDLTGLSSLIHLRELKVDSNHLWSLDGI 708
Query: 445 DSLVNLEILDLSFNRIKEITGLEKLLN-IKKLFLSSNKITEIKNVNHLPNLELLELGDNR 621
L L L NRIKE++ L+ +++L L +N+I EI+ ++ L NL +L+L +N+
Sbjct: 709 QHLDGLLKLSACNNRIKELSFTNSNLHRLEELLLGNNEIEEIEEISSLQNLMVLQLDNNK 768
Query: 622 IREIKNLEGLRTLKQLYLGKNKISKIQ 702
+ +K + + L+ L + N I +++
Sbjct: 769 LTNLKASQPMIHLRILRISNNAIHQLE 795
Score = 52.4 bits (120), Expect = 6e-08
Identities = 44/158 (27%), Positives = 80/158 (50%), Gaps = 5/158 (3%)
Frame = +1
Query: 271 LDLNHGRIGKIENLEHLKKLERLYLRWNLIKKIEGLEMLQSLVELELYDNQIVVIENLDS 450
L +++ I ++E ++ L LY+ N + + L+ LV + Q N
Sbjct: 784 LRISNNAIHQLE-VDQFPHLRTLYMDLNRFNRPPDIRRLKRLVNFS-FRTQDPEASNFVI 841
Query: 451 LVNLEI--LDLSFNRIKEITGLEKLLNIKKLFLSSNKITEIKN--VNHLPNLELLELGDN 618
+L+I L LS N + L ++ L L++ ++ E+ +PNL +L+L N
Sbjct: 842 QPSLDIRNLYLSNNTFVTLDCKHMFLGVRYLELANVQLKEVPKYIATSMPNLRVLDLSHN 901
Query: 619 RIREIKNLEGLRTLKQLYLGKNKISKIQNLED-LTNLE 729
I +I++L+ L+ + +LYL N+I K++NL D L NL+
Sbjct: 902 YISDIESLKPLQMIHRLYLVGNRIKKMRNLCDILANLK 939
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 63.7 bits (148), Expect = 3e-11
Identities = 48/131 (36%), Positives = 78/131 (59%), Gaps = 8/131 (6%)
Frame = +1
Query: 256 EETKELDLNHGRIGKI--ENLEHLK-KLERLYLRWNLIKKIEGLEMLQ--SLVELELYDN 420
E LDL+H + ++ E LE ++ ++ RL L N IK I G E+L+ L L + N
Sbjct: 27 ENALTLDLSHLNLRELPYEQLERIQGRIARLALGHNFIKSI-GPEILKFTRLRYLNIRSN 85
Query: 421 QIVVI-ENLDSLVNLEILDLSFNRIKEI-TGLEKLLNIKKLFLSSNKITEIKN-VNHLPN 591
+ E+L L +LEILD+S N+IK++ L+N+K L +S N++ E+ + H+PN
Sbjct: 86 VLREFPESLCRLESLEILDISRNKIKQLPESFGALMNLKVLSISKNRLFELPTYIAHMPN 145
Query: 592 LELLELGDNRI 624
LE+L++ +N I
Sbjct: 146 LEILKIENNHI 156
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 41.1 bits (92), Expect = 2e-04
Identities = 52/169 (30%), Positives = 84/169 (49%), Gaps = 15/169 (8%)
Frame = +1
Query: 265 KELDL-NHGRIGKIENLEHLKKLERLYLRWNLIKKIEGLEML----QSLVELELYDNQIV 429
K LD+ N+ R + + + L++LE L + N I +++ L SL EL + +N++
Sbjct: 456 KRLDISNNLRSPRGKPITALRQLEVLNMSRNDIYELDPLIFSGLSRNSLKELNIANNKLF 515
Query: 430 VIENLDS-LVNLEILDLSFNR-------IKEITGLEKLLNIKKLFLS--SNKITEIKNVN 579
+ + LVNL LDLS+N I E++ LE LN LS S+KI + +
Sbjct: 516 FLPHSTRYLVNLTYLDLSYNNFVTFPLIITELSQLE-TLNFSHNLLSQISSKIGSLVKLK 574
Query: 580 HLPNLELLELGDNRIREIKNLEGLRTLKQLYLGKNKISKIQNLEDLTNL 726
HL L+ +L + +EI L+ L T+ Y N I+ I +L + L
Sbjct: 575 HL-YLQFNDLSNRLPQEIGLLKNLETIDLSY---NAITNIASLSECPKL 619
Score = 33.5 bits (73), Expect = 0.032
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Frame = +1
Query: 310 LEHLKKLERLYLRWNLIKKIEG-LEMLQSLVELELYDNQIV--VIENLDSLVNLEILDLS 480
+ L +LE L NL+ +I + L L L L N + + + + L NLE +DLS
Sbjct: 544 ITELSQLETLNFSHNLLSQISSKIGSLVKLKHLYLQFNDLSNRLPQEIGLLKNLETIDLS 603
Query: 481 FNRIKEITGLEKLLNIKKLFLSSNKIT 561
+N I I L + + + ++ N ++
Sbjct: 604 YNAITNIASLSECPKLNSINVACNLLS 630
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 34.3 bits (75), Expect = 0.018
Identities = 28/92 (30%), Positives = 42/92 (45%)
Frame = +1
Query: 454 VNLEILDLSFNRIKEITGLEKLLNIKKLFLSSNKITEIKNVNHLPNLELLELGDNRIREI 633
VN+E + N KE T L+ L +++ N E N++ L LE E DN +E
Sbjct: 25 VNIEEPEHHDNSNKESTNLDDLNMLEEPKYHDNSNKESTNLDDLNMLEEPEHHDNSKKES 84
Query: 634 KNLEGLRTLKQLYLGKNKISKIQNLEDLTNLE 729
NL+ L++ N + NL+DL E
Sbjct: 85 TNLDDSNMLEEPKHHDNSNKESTNLDDLNMSE 116
Score = 32.3 bits (70), Expect = 0.073
Identities = 24/79 (30%), Positives = 37/79 (46%)
Frame = +1
Query: 493 KEITGLEKLLNIKKLFLSSNKITEIKNVNHLPNLELLELGDNRIREIKNLEGLRTLKQLY 672
KE +G +NI++ N E N++ L LE + DN +E NL+ L L++
Sbjct: 16 KEESGESNRVNIEEPEHHDNSNKESTNLDDLNMLEEPKYHDNSNKESTNLDDLNMLEEPE 75
Query: 673 LGKNKISKIQNLEDLTNLE 729
N + NL+D LE
Sbjct: 76 HHDNSKKESTNLDDSNMLE 94
Score = 31.1 bits (67), Expect = 0.17
Identities = 30/100 (30%), Positives = 44/100 (44%)
Frame = +1
Query: 352 NLIKKIEGLEMLQSLVELELYDNQIVVIENLDSLVNLEILDLSFNRIKEITGLEKLLNIK 531
+L K+ G ++ E E +DN NLD L LE N KE T L+ L ++
Sbjct: 13 DLNKEESGESNRVNIEEPEHHDNSNKESTNLDDLNMLEEPKYHDNSNKESTNLDDLNMLE 72
Query: 532 KLFLSSNKITEIKNVNHLPNLELLELGDNRIREIKNLEGL 651
+ N E N++ LE + DN +E NL+ L
Sbjct: 73 EPEHHDNSKKESTNLDDSNMLEEPKHHDNSNKESTNLDDL 112
Score = 30.7 bits (66), Expect = 0.22
Identities = 32/98 (32%), Positives = 41/98 (41%)
Frame = +1
Query: 226 EDTNEIILVNEETKELDLNHGRIGKIENLEHLKKLERLYLRWNLIKKIEGLEMLQSLVEL 405
E++ E VN E E N + + NL+ L LE N K+ L+ L L E
Sbjct: 17 EESGESNRVNIEEPEHHDNSNK--ESTNLDDLNMLEEPKYHDNSNKESTNLDDLNMLEEP 74
Query: 406 ELYDNQIVVIENLDSLVNLEILDLSFNRIKEITGLEKL 519
E +DN NLD LE N KE T L+ L
Sbjct: 75 EHHDNSKKESTNLDDSNMLEEPKHHDNSNKESTNLDDL 112
Score = 29.1 bits (62), Expect = 0.68
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Frame = +1
Query: 352 NLIKKIEGLEMLQSLVELELYDNQIVVIENLDSLVNLEILDLSFNRIKEITGLE--KLLN 525
N K+ L+ L L E + +DN NLD L LE + N KE T L+ +L
Sbjct: 35 NSNKESTNLDDLNMLEEPKYHDNSNKESTNLDDLNMLEEPEHHDNSKKESTNLDDSNMLE 94
Query: 526 IKKLFLSSNKITEIKNVNHLPNLELLELGDNRIREIKNLE 645
K +SNK E N++ L E + D+ +E NL+
Sbjct: 95 EPKHHDNSNK--ESTNLDDLNMSEEPKHHDSSNKESTNLD 132
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 30.3 bits (65), Expect = 0.30
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +1
Query: 385 LQSLVELELYDNQIVVIEN-LDSLVNLEILDLSFNRIKEITGLEKLLNIKKLFLSSNKIT 561
L SL + EL+ + +E+ L+S+ N+E D+ F+R + I L+++ K+ S N +
Sbjct: 819 LASLTKSELFSEECASLEDVLESINNIED-DVGFSREEAIVALKEMDAQNKIMFSDNVVY 877
Query: 562 EI 567
I
Sbjct: 878 RI 879
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 29.5 bits (63), Expect = 0.52
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +1
Query: 319 LKKLERLYLRWNLIKKIEGLEMLQSLVELELYDNQIVVIENLDSLV---NLEILDLSFN 486
L L+ L L N + + GLE + SL +L++ DN I + LV N E LS N
Sbjct: 402 LSHLQILVLSRNHLTSLSGLENVPSLEKLDIRDNSITDVVEFRRLVGNTNFEEAYLSLN 460
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -2
Query: 166 HFLSHCSLLWAHHLLRY*SYVHLAETLLVSASDCIRLKKFLNS 38
HF L W L + YV AE L + AS + +K+F+ S
Sbjct: 1344 HFSLISDLAWLPVLYNFFFYVQDAEELAIRASASLGIKRFIES 1386
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +1
Query: 466 ILDLSFNRIKEITGLEKLLNIKKLFLSSNKITEIKNVNHLPNLELLELG 612
+L LS N + + + + + KL L + T +KN+ ++ +LE LELG
Sbjct: 623 VLQLSDNEVTDASFISE-----KLKLKYQQFTTLKNLKNIDSLESLELG 666
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 27.5 bits (58), Expect = 2.1
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 15/96 (15%)
Frame = +1
Query: 271 LDLNHGRIGKIENLEHLKKLERL-YLRWNL--------IKKIEGLEMLQSLVELELYDNQ 423
LD++ I I +L+HL+ LE L +LR L I K+ + + SLV+L D
Sbjct: 295 LDISENNIRDIRSLDHLRTLENLKHLRITLSYFNKPTDIAKLLVIARIPSLVKLN--DVN 352
Query: 424 IVVIENLD------SLVNLEILDLSFNRIKEITGLE 513
I E LD S + ++D ++E+T +E
Sbjct: 353 ISPNERLDAELYYTSCIRKLVIDNEIKDVEELTKIE 388
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +1
Query: 250 VNEETKELDLN--HGRIGKIENLEHLKKLERLYLRWNLI 360
+ E+TK + +N H +GKI + E L ++ L L+ NL+
Sbjct: 174 ITEKTKMIVINTPHNPLGKIFSEEELNEIADLVLKHNLL 212
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 27.1 bits (57), Expect = 2.8
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +1
Query: 526 IKKLFLSSNKITEIKNVNHLPNLELLELGDNRIREIKNLEGLRTLKQLYLGKNKISKIQN 705
+KKLF+ + E +++ NL++ LG N + E N GL L+ L +++
Sbjct: 614 VKKLFIKAKIYFESLSLDERGNLKVPSLGINGL-EYDNWPGLNELEMSQLDIPSQGNLKS 672
Query: 706 LED 714
L D
Sbjct: 673 LHD 675
>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 452
Score = 27.1 bits (57), Expect = 2.8
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +1
Query: 400 ELELYDNQIVVIENLDSLVNLEILDLSFNRIKEITGLEKLLNIKKLFLSSNKITEIKNVN 579
EL+LY +I LD N+E+ D + + +++ GL +LL +FLS + + N+
Sbjct: 195 ELQLYFERITSAL-LDE-TNVELRDAALSSLRDDPGLHQLLPYFIMFLSDSVTRNLGNLV 252
Query: 580 HLPNL 594
L L
Sbjct: 253 VLTTL 257
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +1
Query: 283 HGRIGKIENLEHLKKLERLYLRWNLIKKIEGLEML 387
+G + +EN E + +L RL++ W + ++ E L+ L
Sbjct: 69 YGEVFVLEN-ERISQLHRLFVSWTVSERAEHLKNL 102
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 25.8 bits (54), Expect = 6.4
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Frame = +1
Query: 226 EDTNEIILVNEETKELDLNHGRIGKIENLEHLKKLERLYLRWNLIKKIEGLEML-QSLVE 402
ED+N + +ETKE D + + K EN E + + L E E QS +
Sbjct: 324 EDSNNSAELAKETKEEDDSENSVDKKENEEDIISSTMMPQDEVLANLTEAYENAPQSTII 383
Query: 403 LELYDNQIVVIENLDSLVNLEILDLS-FNRIKEITG--LEKLLNIKKLFLS 546
E + ++ + + L L R+++ TG L+KL I +L L+
Sbjct: 384 SECLAKYYIHLKEYEYAIGLSKAALEVLKRLQQDTGVKLDKLTRIFQLCLA 434
>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 531
Score = 25.8 bits (54), Expect = 6.4
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +1
Query: 307 NLEHLKKLERLYLRWNLIKKIEGLEMLQSLVELELYDNQIVVIENLDSLVNLEI--LDLS 480
NLE +KKL +R+ + L++ V+LE I I L +N+E+ LD S
Sbjct: 305 NLEGMKKLTEELIRFICLTINGNLQISGQTVDLEKGFEVIEFIPALQKELNVELSPLDNS 364
Query: 481 FNRIKEITGLEKLLNI 528
N K++ + K I
Sbjct: 365 ENCRKQLISIFKRCEI 380
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.136 0.370
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,161
Number of Sequences: 5004
Number of extensions: 48704
Number of successful extensions: 145
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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