Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2i20
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    49   5e-08
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   9.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 48.8 bits (111), Expect = 5e-08
 Identities = 36/104 (34%), Positives = 60/104 (57%), Gaps = 8/104 (7%)
 Frame = +1

Query: 337  LYLRWNLIKKIEGLEMLQSLVELELYDNQ--IVVIEN--LDSLVNLEILDLSFNRIKEIT 504
            +YL  N++++++    +       LY N   I  I+N   + L NL+IL L  NRI+E+ 
Sbjct: 799  VYLDGNVLRELQNHVFIGRKNMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNRIRELK 858

Query: 505  G--LEKLLNIKKLFLSSNKITEIKNVNHLP--NLELLELGDNRI 624
            G   E+L ++++L+L +N I  I N+  LP  +LE+L L  NR+
Sbjct: 859  GFEFERLSHLRELYLQNNLIGFIGNLTFLPLRSLEILRLSGNRL 902



 Score = 47.6 bits (108), Expect = 1e-07
 Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
 Frame = +1

Query: 523  NIKKLFLSSNKITEIKN--VNHLPNLELLELGDNRIREIK--NLEGLRTLKQLYLGKNKI 690
            N++ L+++ + I  I+N   N L NL++L L DNRIRE+K    E L  L++LYL  N I
Sbjct: 819  NMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNRIRELKGFEFERLSHLRELYLQNNLI 878

Query: 691  SKIQNL 708
              I NL
Sbjct: 879  GFIGNL 884



 Score = 45.6 bits (103), Expect = 5e-07
 Identities = 42/141 (29%), Positives = 72/141 (51%), Gaps = 12/141 (8%)
 Frame = +1

Query: 322 KKLERLYLRWNLIKKI-EGL-EMLQSLVELELYDNQI----VVIENLDSLVNLEILDLSF 483
           + L  ++L +N ++ + +G+   L+ L+ L L  N++    V       L+ L +L+LS+
Sbjct: 285 RDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAGNRLGSDRVDETTFLGLIRLIVLNLSY 344

Query: 484 NRIKEITG--LEKLLNIKKLFLSSNKITEIKNVNHLP--NLELLELGDNRIREI--KNLE 645
           N +  I     + L  ++ L L +N I  I++   LP  NL  LEL DN++R +  +   
Sbjct: 345 NMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNLHTLELSDNKLRTVGAQLFN 404

Query: 646 GLRTLKQLYLGKNKISKIQNL 708
           GL  L +L L  N I+ I  L
Sbjct: 405 GLFVLNRLTLSGNAIASIDPL 425



 Score = 41.9 bits (94), Expect = 6e-06
 Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
 Frame = +1

Query: 271 LDLNHGRIGKIEN--LEHLKKLERLYLRWNLIKKIEGL-EMLQSLVELELYDNQIVVIEN 441
           L+L   ++  +E    E   +LE + L  N +  I G+   + SL+ L L +N I   + 
Sbjct: 507 LNLARNKVQHVERYAFERNMRLEAIRLDGNFLSDINGVFTSIASLLLLNLSENHIEWFDY 566

Query: 442 LDSLVNLEILDLSFNRIKEITGLEKLLN--IKKLFLSSNKITEIKNVNHLPNLELLELGD 615
                NL+ LD+  N I+ +    K+ +  +K L  S N+ITE+  ++   ++ELL + +
Sbjct: 567 AFIPGNLKWLDIHGNFIESLGNYYKIRDSKVKTLDASHNRITELSPLSVPDSVELLFINN 626

Query: 616 NRIREIK 636
           N I  ++
Sbjct: 627 NYINLVR 633



 Score = 33.9 bits (74), Expect = 0.002
 Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 5/119 (4%)
 Frame = +1

Query: 385 LQSLVELELYDN--QIVVIENLDSLVNLEILDLSFNRIKEITGLEKLLNIKKLFLSSNKI 558
           L+ L  LE+ ++  Q + + +L SL NL+ L+L+ NR+++I  +   LN +     S+  
Sbjct: 146 LRELHTLEIVESNVQALPVNSLCSLDNLQTLNLTENRLRDINDIG--LNRRDSDDGSDG- 202

Query: 559 TEIKNVNHLPNLELLELGDN---RIREIKNLEGLRTLKQLYLGKNKISKIQNLEDLTNL 726
            +    +   ++ +L+L  N   R++E   L  LR L++L+L +N I +I   + LT L
Sbjct: 203 NDGDESSCRADIRILDLSRNEITRLQENSPLLDLRQLQELHLQRNAIVEIAG-DALTGL 260



 Score = 30.3 bits (65), Expect = 0.020
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +1

Query: 271  LDLNHGRIGKIENLE--HLKKLERLYLRWNLIKKIEGLEM--LQSLVELELYDNQIVVIE 438
            L L   RI +++  E   L  L  LYL+ NLI  I  L    L+SL  L L  N++V   
Sbjct: 847  LHLEDNRIRELKGFEFERLSHLRELYLQNNLIGFIGNLTFLPLRSLEILRLSGNRLVTFP 906

Query: 439  NLDSLVNLEILDLS 480
                 +N  +++LS
Sbjct: 907  VWQVTLNARLVELS 920


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 349 WNLIKKIEGLEMLQSLVELELYDNQIVVIENLDSLVNLEILDLSFNRIKEITG 507
           W  IKK   + M    +  ++YD++I     + + VN   L++  N I E+ G
Sbjct: 22  WEAIKKDAAVNMEGQFLVRQIYDDEI-TYNIISAAVNR--LNIPANEILELFG 71


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 349 WNLIKKIEGLEMLQSLVELELYDNQIVVIENLDSLVNLEILDLSFNRIKEITG 507
           W  IKK   + M    +  ++YD++I     + + VN   L++  N I E+ G
Sbjct: 22  WEAIKKDAAVNMEGQFLVRQIYDDEI-TYNIISAAVNR--LNIPANEILELFG 71


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 322 LNVQDSRSCLYGRDLS 275
           LNVQ +  C+ G+D S
Sbjct: 469 LNVQRAAKCIIGKDYS 484


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 457 NLEILDLSFNRIKEITGLEK 516
           N+  LDLS  +++ ITG+ K
Sbjct: 814 NILFLDLSTGKVEMITGVGK 833


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 12  LNKKSFLLCEFRNFFRRIQSLADTNNVS 95
           L  K +L CE+    R I S    NNV+
Sbjct: 45  LKLKRYLFCEYDPNVRPISSHQIANNVT 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.136    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,915
Number of Sequences: 438
Number of extensions: 3023
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)