Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2i15
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    27   2.7  
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    26   3.5  
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce...    26   3.5  
SPBC216.06c |swi1||replication fork protection complex subunit S...    26   4.7  

>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 143 RNKRINRISTCSIREQGY*KNIGTKFSC 226
           ++ + NR+  C+    GY  N G KF+C
Sbjct: 136 KSMQTNRLPGCTAESWGYHGNSGEKFNC 163


>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 121 LSMPLFAPMSDEKNAL*IS*FLFNVKFTHKVTTNLEKAKF 2
           LS+P +AP   EK+AL I+   +NV       TN+ ++ F
Sbjct: 104 LSIPNYAPFETEKSALDITIMTYNV----LAQTNIRRSMF 139


>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +1

Query: 166 LNMFNKRTRILKKYR--N*ILLSVKIHSRKFEFPRKEQDLYDNDYQESLAA*IEIW 327
           +N+ N+R ++L      N  LL    H ++ +FP K+Q LY+ +  E   + IE +
Sbjct: 197 INIDNQRPKLLVNMLLFNDRLLVTTSHMKEVDFPAKQQVLYNWNLTEISISSIETY 252


>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 259 PRKEQDLYDNDYQESLAA 312
           P+K +++Y NDY   LAA
Sbjct: 388 PKKTEEIYSNDYSFGLAA 405


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,181,975
Number of Sequences: 5004
Number of extensions: 38647
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)