Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2i14
(755 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 28 1.7
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch... 28 1.7
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 27 2.9
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo... 26 5.0
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 26 5.0
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 26 6.7
SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|c... 26 6.7
SPBC887.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.8
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 25 8.8
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Frame = -3
Query: 654 FSLTYCMYLLIQIKIASVYFEF----YSSGLIDTFATLVSSMISETL 526
+S +Y +++IQ+ + ++ F YSSG+ID + L SS+ TL
Sbjct: 100 WSHSYKWWIVIQVSVITIVVTFASSVYSSGIIDIASELHSSIPVSTL 146
>SPAC22F8.12c |shf1||small histone ubiquitination factor
Shf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 165
Score = 27.9 bits (59), Expect = 1.7
Identities = 18/71 (25%), Positives = 30/71 (42%)
Frame = +2
Query: 83 SYYTATKDVLNKQKLSFSYHFLAISKMSTKYHKNCTKDPNELEDPTRKQPDEQLTRKLKP 262
S Y + N ++ + YH+ S ST+ +E P PD L+ KL+
Sbjct: 50 SSYDSPSSSTNSKEHNSPYHYRVPSNNSTRASFGAASTDTNVELPKINLPDSSLSSKLQ- 108
Query: 263 LTTKPLCDCSN 295
+ K C+ S+
Sbjct: 109 -SCKSACENSS 118
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = -2
Query: 721 IWRNVITKIIITLVSLLKN*MFFFFDLLYVFVNSNKNCFSVF*ILFLWFNRY 566
+W V I T+ + +K F ++ S NC F ++ LW N Y
Sbjct: 981 VWTEVAFATIFTIEAAIKIIADGFCITPNAYLRSTWNCIDFFVLVTLWINLY 1032
>SPAC23H3.02c |ini1||RING finger-like protein
Ini1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +2
Query: 218 TRKQPDEQLTRKLKPLTTKPLCDCSNCTCKDCPDVLKTFSINVTEDSCDFGTKK 379
++ PD L R+ +T LC+ + C C ++ ++ D C FG+ +
Sbjct: 2 SKHHPDLVLCRRQPGITVGKLCERCDEKCPICDSHVRPTTLVRICDECAFGSSQ 55
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 26.2 bits (55), Expect = 5.0
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Frame = +2
Query: 53 QQQCIYIAK-HSYYTATKDVLNKQKLSFSYHFLAISKMSTKYHKN------CTKDPNELE 211
Q Q I I+K + T T+DV+NK + L K S K+ N CT + +E+
Sbjct: 241 QMQKIKISKLGTAETQTEDVMNKSSQKENNDILRKHKTSVKFPTNLDALNSCTMENHEIN 300
Query: 212 D--PTRKQPDEQLTR 250
+ T K D +T+
Sbjct: 301 ELTATNKMNDGPITK 315
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -3
Query: 453 LFNTSSKLWQSFMDTSCELSSICSTFFVPKSQESSVTLI 337
++ T +L D E SSI S F +PK E V +
Sbjct: 233 MYETCMRLRGKTYDYKVEYSSINSLFLLPKPDEQHVVFV 271
>SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 50
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +2
Query: 245 TRKLKPLTTKPLCDC-SNCTCKDCPD 319
T + K KP CDC S C C+DC +
Sbjct: 4 TTQCKSKQGKP-CDCQSKCGCQDCKE 28
>SPBC887.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = +2
Query: 56 QQCIYIAKHSYYTATKDVLNKQKLSFSYHFLAISKMSTKYHKNCTKDPNELEDPTRK 226
+Q + A+ YY + +K +F + S +YH+ + + NE+ED R+
Sbjct: 59 EQSKFAAEEQYYLGNYSLA--KKFAFQALDVPTDSSSIEYHRLSSGEINEIEDIIRR 113
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 509 IHRGKHKVSDIIDETNVANVSIKPEE*N-SKYTEAI 613
+ R +HK+SD + E N N ++ ++ N K+ +A+
Sbjct: 98 VERLEHKISDYVQEINSLNSQLQIQKSNPEKHEDAV 133
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,889,910
Number of Sequences: 5004
Number of extensions: 59216
Number of successful extensions: 217
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -