Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2i13
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    33   0.057
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    26   5.0  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   8.7  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    25   8.7  

>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 32.7 bits (71), Expect = 0.057
 Identities = 39/136 (28%), Positives = 57/136 (41%), Gaps = 5/136 (3%)
 Frame = +3

Query: 270 FKEMFKAHDEENIDKIPLEAIPLMLRKLGFNPKGAEI----RTLFAQFLEDEYVDTVELH 437
           +K+ F   D     +IP  +I  +LR  G NP  AEI     TL A+   ++++  +   
Sbjct: 8   YKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEIESTLPAEVDMEQFLQVLNRP 67

Query: 438 EWFFMIEAKMNWGDDFELAVTKAFACLGHDDEETGTVDFLALKEELMTWGEPLSELEFMD 617
             F M       GD  E    K F     D + TG +    L+  L + GE LS  E  +
Sbjct: 68  NGFDMP------GDPEEF--VKGFQVF--DKDATGMIGVGELRYVLTSLGEKLSNEEMDE 117

Query: 618 WTK-LAMKDKTYNPED 662
             K + +KD   N  D
Sbjct: 118 LLKGVPVKDGMVNYHD 133


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 317 DLVYVLFIVSFEHFLKPHNIFVTEAG 240
           ++ +  F   F  FLKP ++ +TE G
Sbjct: 369 EITHCWFWPKFSEFLKPRDVLITETG 394


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -3

Query: 588 PPMSLVLLSELENQQYLFLHHHDPNKQML**QQARNRHPNS 466
           PP+   L   ++N  Y+ LHH   N  ++    A   HP +
Sbjct: 401 PPIEAKLNVPVKNMDYIKLHHVGTNTDLMTHDVASPYHPTN 441


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +3

Query: 516 LGHDDEET--GTV-DFLALKEELMTWGEPLSELEFMDWTKLAMKDKTYNPEDGMFSYV 680
           L H DE     T+ D +++ ++L+ W  P+SEL       L   DK    E GM  Y+
Sbjct: 417 LAHLDERAPVSTIQDDMSVIDDLLQWKGPISELVSCKVAALCYLDKEI--ESGMDKYL 472


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,659,679
Number of Sequences: 5004
Number of extensions: 51114
Number of successful extensions: 163
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)