Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2i11
(503 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0757 + 19316949-19317892,19318403-19318430,19318932-19319042 31 0.69
12_02_1077 - 25871439-25871453,25872805-25872867,25872976-25873977 30 1.2
07_01_0549 + 4082672-4082731,4083424-4083489,4083628-4083674,408... 29 2.8
11_05_0023 - 18447015-18447410,18448156-18448308,18448679-184495... 28 3.7
11_01_0449 - 3473662-3475049,3476026-3476128,3476215-3476439,347... 28 4.9
01_06_0499 + 29823578-29823754,29823882-29824002,29825103-298252... 28 4.9
05_04_0168 + 18686024-18686824 27 6.5
04_03_0689 + 18746735-18748296,18748401-18748485 27 6.5
02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,198... 27 6.5
07_03_1723 - 29038701-29039213,29039341-29039413,29039504-290395... 27 8.6
01_05_0416 + 21956050-21956512,21958001-21958065,21958772-219589... 27 8.6
>04_03_0757 + 19316949-19317892,19318403-19318430,19318932-19319042
Length = 360
Score = 30.7 bits (66), Expect = 0.69
Identities = 20/71 (28%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Frame = -1
Query: 419 VAKLVCLLLSFCVQFRLLVAGTIKYL-IFFL*YGHA-GSSQPSTSASRRTGPPSRNTSSP 246
+A+ LL + + F ++++ ++Y IF L +G GS + + S++ PP R +SSP
Sbjct: 1 MARWTLRLLLWVLAFGVILSQLLRYATIFALAFGFGDGSRRRTLSSASSLPPPWRPSSSP 60
Query: 245 MISLRAQANRQ 213
+ + R++ R+
Sbjct: 61 ISAERSRRQRR 71
>12_02_1077 - 25871439-25871453,25872805-25872867,25872976-25873977
Length = 359
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = -1
Query: 368 LVAGTIKYLIFFL*YGHAGSSQPSTSASRRTGPPSRNTS-SPMISLRAQ 225
L AG L+ + G + ++ PST+A RT PSR+ S + M+ L A+
Sbjct: 281 LAAGVDDLLVVSIGSGSSSAATPSTAAGWRTPLPSRSPSPAEMVRLTAE 329
>07_01_0549 +
4082672-4082731,4083424-4083489,4083628-4083674,
4083757-4083802,4083905-4083985,4084105-4084147,
4084258-4084307,4084392-4084473,4084538-4084587,
4084687-4084760,4084870-4084921,4085034-4085459,
4085816-4086403
Length = 554
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -1
Query: 326 YGHAGSSQPSTSASRRTGPPSRNTSSPMISLRAQANRQGPQTAT 195
+ A + PS + R P+R S+P+ L+ RQG T
Sbjct: 354 HARAAETPPSKCSLERASQPTRRASTPVNMLQTPEKRQGADILT 397
>11_05_0023 -
18447015-18447410,18448156-18448308,18448679-18449524,
18449688-18449702
Length = 469
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/66 (25%), Positives = 26/66 (39%)
Frame = -2
Query: 448 YKKNLNQTTVLPN*SAFYYRFVCSSVFSWRVPLST*YSFCNTDTPVRHSPVLQLHVGLGR 269
Y N+T P + + C + LS Y FC+ + + SP L+ +
Sbjct: 281 YLSTRNETVNTPKVLGKFLQLKCLEILLLTPDLSPGYDFCSLVSFIDASPALETFILRIE 340
Query: 268 RPATLH 251
RPA H
Sbjct: 341 RPAKRH 346
>11_01_0449 -
3473662-3475049,3476026-3476128,3476215-3476439,
3476689-3476856,3477414-3477529,3477640-3477792,
3477879-3478022,3478980-3479583
Length = 966
Score = 27.9 bits (59), Expect = 4.9
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -2
Query: 379 SSVFSWRVPLST*YSFCNTDTPVRHSPVLQLHVGLGRRPATLHLL*SVFVRKP 221
S + S +PL+ +SF +P+ ++ LH GR PA H S + P
Sbjct: 521 SDLPSLHLPLALAFSFLADPSPLPRRLLVVLHAAGGRYPAFYHAFASALLSLP 573
>01_06_0499 +
29823578-29823754,29823882-29824002,29825103-29825227,
29825338-29825432,29825890-29825994,29826103-29826899,
29827100-29827154,29827930-29828035,29828126-29828268,
29828816-29829038
Length = 648
Score = 27.9 bits (59), Expect = 4.9
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = -1
Query: 317 AGSSQPSTSASRRTGPPSRNTSSPMISLRAQANRQGPQTATAHTAA 180
AG+S STSAS R PP+R+ + L A ++Q P +H AA
Sbjct: 2 AGAS--STSASARATPPARS----LPPLGASGSQQEPAATASHHAA 41
>05_04_0168 + 18686024-18686824
Length = 266
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +1
Query: 244 IGDEVLRDGGPVLREAEVLGCDEPACPYY 330
IGD V + VL LG EPAC YY
Sbjct: 96 IGD-VCDESAAVLSRLRELGASEPACVYY 123
>04_03_0689 + 18746735-18748296,18748401-18748485
Length = 548
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = -2
Query: 319 TPVRHSPVLQLHVGLGRRPATLHLL*SVFVRKPTDKGHRPPRHTP 185
TP +H+P Q+H+G P L+ + RPP+ P
Sbjct: 52 TPPQHNPAFQIHMGADASPQN-PLMAAAAAAAAAASAKRPPQKPP 95
>02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,
1987805-1988305,1989010-1990016,1990131-1990781,
1991337-1991633,1991735-1992013,1993070-1993198,
1993291-1993491,1993651-1993793,1993878-1994190,
1994349-1994488,1995320-1995398,1995484-1995753,
1996208-1996425,1996521-1996632
Length = 1623
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 301 GCDEPACPYYKKNIRYLMVPATRRRNCTQNDNKRQ 405
GC+ P C K+++R L + RR N+ RQ
Sbjct: 1580 GCNVPRCRDLKEHLRRLQQQSDSRRRAAVNEMMRQ 1614
>07_03_1723 - 29038701-29039213,29039341-29039413,29039504-29039594,
29039684-29039741,29039829-29039905,29040004-29040214,
29040339-29040386,29042496-29042608,29043270-29043341,
29044372-29046336,29046434-29046641,29046847-29047165,
29047813-29047937,29048024-29048157,29049089-29049164,
29049276-29049428,29049829-29050532,29050636-29050811,
29050945-29051107,29051199-29051341,29051802-29051914,
29053113-29053237,29053867-29054016,29054753-29054921,
29055201-29055418,29055499-29055709
Length = 2135
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +1
Query: 310 EPACPYYKKNIRYLMVP--ATRRRNCTQNDNKRQTNLATQ*FDLS 438
EPA K YL+ P +RRR+C+ + + L DLS
Sbjct: 2068 EPAAARSGKEHHYLLFPNEPSRRRSCSDERRREMSTLQASELDLS 2112
>01_05_0416 +
21956050-21956512,21958001-21958065,21958772-21958933,
21959006-21959107
Length = 263
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 320 HAGSSQPSTSASRRTGPPSRNTSSP 246
H ++ + RRTGPPSR +SP
Sbjct: 36 HEALARHKSPDFRRTGPPSRTNTSP 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,469,735
Number of Sequences: 37544
Number of extensions: 216658
Number of successful extensions: 619
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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