Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2i08
(754 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 28 1.2
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S... 27 2.2
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos... 26 5.0
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 5.0
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 26 6.6
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 26 6.6
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 26 6.6
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 25 8.8
SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po... 25 8.8
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 28.3 bits (60), Expect = 1.2
Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +3
Query: 66 NKFDSRRK-TRAPALGSPPMSAALY-VPPGRR*NEVPLSLQLE*RDSFQLTKARKETLDS 239
++F+++RK T+ P + + + +P +E + + E D+FQ+ KA K++L+
Sbjct: 77 HRFNTKRKITKLPPVSQDEFESIIEDLPESLSGSESETNSESE-EDNFQIEKAFKQSLNI 135
Query: 240 SAVLKPLHDDNQRSTS 287
V ++NQR+ S
Sbjct: 136 GKVDSADENNNQRTNS 151
>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 94 ERLRSVRPLCLPHSMCHLDAVRMKCHYRCNWNKEIVFNSQKLVKRR 231
+R ++ RP LP + LD R + + EI++NS++ V++R
Sbjct: 275 QRCKTFRPFHLPSDVHSLDYERAILGMKLSCGFEILYNSKENVEKR 320
>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 622 LWCCRVNAFNTAAESAGTRDSVAS 693
LW CR N+F+ A +DSV+S
Sbjct: 124 LWDCRSNSFSPIQVLADAKDSVSS 147
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/62 (25%), Positives = 25/62 (40%)
Frame = +2
Query: 491 PSIFENISEVPERVDPQPPAAVLASSPFVTSQPTEELLREFETVYGAVELTHLTPPQSPP 670
P+ S V P P A++ AS+P + S P ++ + T + P Q P
Sbjct: 895 PAAMSRTSSVSTLPPPPPTASMTASAPAIASPPPPKVGETYHP--PTASGTRVPPVQQPS 952
Query: 671 GP 676
P
Sbjct: 953 HP 954
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 470 LEEKVDLPSIFENISEVPERVDPQPPAAVLASSPFVTSQPT-EELLREFETV 622
+E + D+ S N S +P+ P V+ SSP + P+ +++ + +T+
Sbjct: 470 IEPEPDVISTVRNSSTIPQASSSSVPKIVVDSSPVTENPPSHSDVMGQKDTI 521
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -1
Query: 328 KTIGGSVIL*TGILEVERWLSSWSGFNTAEESNVSLRAFVS*KLSLYSN 182
K + +L + + +RWL++WS F ++ +L++ VS SL S+
Sbjct: 1101 KRLINEYVLPLAVSQNDRWLTNWS-FTILKQEKKALQSLVSPIRSLVSD 1148
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 644 ALTRQHHKPFRIPAAVLQWAARSQKDLK-LEPLPGVVGPRVQELQK 510
A T H P + P+ +QW +S +DL+ ++ V+ +E K
Sbjct: 746 AFTHLGHHPDKTPSEYIQWRFQSGEDLEAMDKASRVISEADEEAMK 791
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 365 SYNSLKTKFKSIQNYRGQCYSLNWNPRGRALVVVV 261
S +S+ T S + +R YS+ W+P +++ VV
Sbjct: 372 SSSSVATPVASFKWHRAPIYSIEWHPNEDSVIGVV 406
>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +1
Query: 115 PLCLPHSMCHLDAVRMKCHYRCNWNKEIVFNSQKL 219
P CL HS D KC CN +++ + +L
Sbjct: 151 PFCLDHSYILEDQQHNKCLVHCNQSRKDLLGCSQL 185
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,980,267
Number of Sequences: 5004
Number of extensions: 61411
Number of successful extensions: 155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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