Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2i05
         (421 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.02c |||electron transfer flavoprotein beta subunit |Sch...    39   4e-04
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe...    24   8.4  
SPAC1002.01 ||SPAC1610.05|conserved fungal protein|Schizosacchar...    24   8.4  

>SPAC1805.02c |||electron transfer flavoprotein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 38.7 bits (86), Expect = 4e-04
 Identities = 22/51 (43%), Positives = 31/51 (60%)
 Frame = -3

Query: 221 LRTALAMGADRAIHVEVAGAEYDTLQPIHVAKILAKLSQDEKADLVIVGKQ 69
           LR  LA G  RA  + V   E   L+P+ VAK+L    + EK++LV++GKQ
Sbjct: 77  LRQCLAKGIGRAALINVGEKE---LEPLSVAKLLKATVEKEKSNLVLLGKQ 124


>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 137 HVAKILAKLSQDEKADLVIVGKQVTTIKNAYIFLCHCV 24
           H   +LA  S     +L++ G   TT+K   +  C+CV
Sbjct: 253 HTDAVLALSSNRNAHNLLVSGSADTTLKLWDLSTCNCV 290


>SPAC1002.01 ||SPAC1610.05|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 179

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -1

Query: 151 HYSPFMLQKS*QNC-HKMRRQT 89
           HYSPF+LQ+  Q+  H +R  T
Sbjct: 39  HYSPFILQEKVQSSNHTIRSDT 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,437,937
Number of Sequences: 5004
Number of extensions: 25485
Number of successful extensions: 50
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)