Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2i05
         (421 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0424 - 5601690-5601915,5602099-5602187,5603298-5603378,560...    54   6e-08
06_01_0213 + 1628974-1629339,1629441-1629590,1630935-1631095,163...    27   4.6  
01_05_0724 - 24612712-24612852,24612985-24613038,24613340-246134...    27   6.1  

>04_01_0424 -
           5601690-5601915,5602099-5602187,5603298-5603378,
           5604875-5605240
          Length = 253

 Score = 53.6 bits (123), Expect = 6e-08
 Identities = 30/53 (56%), Positives = 35/53 (66%)
 Frame = -3

Query: 227 ETLRTALAMGADRAIHVEVAGAEYDTLQPIHVAKILAKLSQDEKADLVIVGKQ 69
           +TLRTALAMGADRA+HV         L P+ VAKIL  L+  E   LVI+GKQ
Sbjct: 70  DTLRTALAMGADRAVHVLHDPDPSRPLLPLAVAKILRALALQENPGLVILGKQ 122


>06_01_0213 +
           1628974-1629339,1629441-1629590,1630935-1631095,
           1631178-1631892,1632045-1632091,1632295-1632316
          Length = 486

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
 Frame = -3

Query: 239 FIIKETLRTALAMGADRAIHV---EV-AGAEYDTLQPIHVAKILAKLSQDEKADLVIV 78
           F+ K+TL   L   A++ IH+   EV AG+ Y + + + VA+++  L   +K  + I+
Sbjct: 286 FVPKQTLHDLLEFAAEKNIHLISDEVFAGSTYGSGKFVSVAEVVDDLEDFDKGRVHII 343


>01_05_0724 -
           24612712-24612852,24612985-24613038,24613340-24613429,
           24613499-24613780,24613926-24614119,24614379-24614508,
           24614610-24614690,24614766-24614891,24615019-24615076,
           24615319-24615380,24615753-24615803,24615946-24616065,
           24616280-24616403,24616832-24616920,24617304-24617396,
           24617910-24618063,24618673-24619178
          Length = 784

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -3

Query: 251 KLVYFIIKETLRTALAMGADRAIHVEVAGAEYDTLQPIHVAKILAK 114
           KL+YFI++E + TA        + +   GA      PIH A IL +
Sbjct: 586 KLLYFILRELILTAYHESGHAIVALNTQGA-----HPIHKATILPR 626


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,209,948
Number of Sequences: 37544
Number of extensions: 138775
Number of successful extensions: 299
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)