Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2i03
(738 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc... 30 0.30
SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c... 29 0.69
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 29 0.91
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 26 4.9
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 26 4.9
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 6.4
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 26 6.4
SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces po... 25 8.5
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 25 8.5
>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 402
Score = 30.3 bits (65), Expect = 0.30
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = -1
Query: 462 ETNVSDFIRA-EDWPSSSPDLNPLDYDLWSVLESTA-RSKRHYNLESLKQSVRLAVKNFP 289
E +VS F +A E + +L P + S+L +TA + ++H L L V L +
Sbjct: 89 EDHVSKFCQALEQIADQNNNLTPAILSVLSILFNTAVKERQHARLSILTSVVTLTTRYSL 148
Query: 288 MERVRASIDNWPQRLKECIAANGDH 214
+ ++ +P LKE + DH
Sbjct: 149 FSTLAPNLKYFPDWLKEAGVSVSDH 173
>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 374
Score = 29.1 bits (62), Expect = 0.69
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -3
Query: 223 WRPLRISFLYFKLFYIYVLN*HTVKVIN-VICNRIFFSLVSVFMARLGIY 77
WR R+ F+ F++YV + T K N I +R + SL S F + Y
Sbjct: 46 WRDFRLEFVILACFFLYVFSFITQKKKNQKIASRWYGSLQSSFRQQFAQY 95
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 28.7 bits (61), Expect = 0.91
Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 3/111 (2%)
Frame = -1
Query: 534 NNQEWSFQQESAPGHKARSTQSWLETNVSDFIRA--EDWPSSSPDLNPLDYDLWSVLEST 361
N EW +E+APG+K + + LE+ + D ++ +D +S +L V +
Sbjct: 2 NIDEWQRIEETAPGNKCLAKLNELESILKDAKKSCLKDPTTSMKELVACSEKTQQVFDDL 61
Query: 360 ARSKRHYNLESLKQSVRLAVK-NFPMERVRASIDNWPQRLKECIAANGDHF 211
R+++ ++ + L K NF +E ++ ++ + +E A HF
Sbjct: 62 KRTEKKFHTSLNRFGKTLEKKFNFDLEDIKLH-SSFESKKREIDTALSLHF 111
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +1
Query: 559 HYLLKNI*YYIEFAFGQDFFEFCCFDHLFPTNSQGLPNNLKLRE 690
++LL I + + ++ CCF +LF ++S P L ++E
Sbjct: 1979 YFLLTAIANQLRYPSSHTYYASCCFLYLFKSSSNN-PQELLIKE 2021
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 595 FAFGQDFFEFCCFDHLFPTNS 657
F FF CFD LFPT S
Sbjct: 103 FTASPSFFSVDCFDELFPTLS 123
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 372 LESTARSKRHYNLESLKQSVRLAVKNFPMERVRASI 265
+ S +S+ H ESL V L VKN M+ + +I
Sbjct: 702 ISSVMKSRIHAKFESLHSRVELVVKNSYMKLLEQTI 737
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.8 bits (54), Expect = 6.4
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -2
Query: 551 LTTPSSIIKNGPSSKSRRQVIKLGLRSLG-WKRTFRTSSELKTGRRLVPILIRWIMIY 381
L+ PS+ + +G ++ + K GLR G WKR + S+L R L P+ + I +
Sbjct: 163 LSNPSANMGHGGCGAAQPTIRKDGLRLWGSWKRG-KDESDLPEKRLLSPLEVHTIFTH 219
>SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 328
Score = 25.4 bits (53), Expect = 8.5
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Frame = -1
Query: 630 AAEFEKILSESKFYIILYILEKVVKPLNNTKFNNQEWSFQQESAPGHKA---RSTQSWLE 460
A + K S F+ LY+ EK+++ + + + +EW S G++A R S++
Sbjct: 65 AVAYYKEKSPKTFF--LYLNEKIIRLIATSNEDAEEWVHVLRSTTGYRAPFSRHPISYIL 122
Query: 459 TNVSDFIRAEDWPSSSPDLNPLDYD 385
N S R E P + ++ D+D
Sbjct: 123 ANSSS--RTESEP--NVQISDTDFD 143
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 25.4 bits (53), Expect = 8.5
Identities = 17/74 (22%), Positives = 32/74 (43%)
Frame = -1
Query: 534 NNQEWSFQQESAPGHKARSTQSWLETNVSDFIRAEDWPSSSPDLNPLDYDLWSVLESTAR 355
+N+E++F P +S +ETN+ +R + + S L W+ E R
Sbjct: 226 SNKEYAFSVNHLPAINEHKWKSRVETNMLFELRIKSNDNQSVPFEYLRLPSWAHREDKKR 285
Query: 354 SKRHYNLESLKQSV 313
S + L+ ++V
Sbjct: 286 SSKPQPLQPDPETV 299
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,977,764
Number of Sequences: 5004
Number of extensions: 63464
Number of successful extensions: 169
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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