Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2h22
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    29   0.84 
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   1.9  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    27   3.4  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    26   4.5  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    26   5.9  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    26   5.9  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    25   7.8  

>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +2

Query: 434 ERHRRLQFCRLQEPTTYYTWTHRGCIYR--NPKSLLHYVGAHHSNSRRQGARGSRGTV 601
           ER++ LQ C + E T +Y W    C+ R   PK  L    A   + + Q  R  + T+
Sbjct: 13  ERNKLLQICNMDEQTMFYKW-ESWCLQRGNTPKLDLDTFKAFAKDMKFQMERQVKATL 69


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -1

Query: 167 DFIMGASYVYNRDRMASPELYLTYCRTIQFSHYFFFIILVLIYSVVSA 24
           D+I+GA     + ++    LYLT         Y ++I++  IYS+  A
Sbjct: 545 DYILGAGLCKAQPKILLSLLYLTDLSLFFLDTYLWYILISTIYSLAYA 592


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 558 PTPEDREHGAVEERFSSLCYAGHMPG-YTMGYNENGMVFSINTLS 689
           P P+   H +V E ++ L Y  H+P    +   + G+ F   TL+
Sbjct: 110 PNPQTISHESVNEEYTELPYDAHLPSEQKVPDRKWGLTFGFLTLA 154


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 160 MKSASMWVAHSPPSSRASYQITLIYVTLSANTKLILAG 273
           +KS +MW + + PS   S   T+   T SAN  ++  G
Sbjct: 74  LKSGNMWDSLNAPSELTSKNPTVSSTTSSANPAIVSNG 111


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +1

Query: 478 NILYLDTQRMHLPKP*ITSTLCRRTSFQLPKTGST 582
           N+  LDT R  L     TS   R TSF    TG+T
Sbjct: 371 NVYMLDTSRFRLGSVPTTSGRQRNTSFFSNSTGNT 405


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 365  RNVSSISNTPDLLNVVRESLLHVSQGLIVRIPASISF 255
            R+ S  + TPD+L    +S+  + Q + + IP+SI F
Sbjct: 1066 RSQSQFTTTPDILRKAEKSMKKLDQRVSL-IPSSIEF 1101


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 40/138 (28%), Positives = 55/138 (39%), Gaps = 6/138 (4%)
 Frame = +3

Query: 150 GSHYEVGFDVGRTFSSIIKSFISNYA-----NLRDFEREYKTDTGRNAYDKTLANMEKRF 314
           G  YE+G D GR  ++   S I +YA       + FER   +  G    +    N  K++
Sbjct: 148 GFFYEMGIDNGRVITNDDYSSIESYAKQAIKQKQPFERLVISKEG--LLEMFRYNKYKQY 205

Query: 315 PYYVKEIRGVADGANVPFYQLFLLQMDDLIGTINDNHVPRNDTGGCSSVAF-KNPQHTIL 491
               K    + DGA+   Y     +   LI      HVP   TG   S A  KN     L
Sbjct: 206 IIQTK----IPDGASTTVY-----RCGPLIDLCTGPHVPH--TGRIKSFAVTKNSSSYFL 254

Query: 492 GHTEDAFTETLNHFYIMS 545
           G   DA  ++L   Y +S
Sbjct: 255 G---DAKNDSLQRVYGIS 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,005,916
Number of Sequences: 5004
Number of extensions: 65218
Number of successful extensions: 157
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)