Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2h22
         (689 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0855 - 6666854-6666969,6667107-6667230,6667679-6667849,666...    39   0.004
12_01_0104 - 816185-816602,816710-816817,816910-817037                 33   0.28 
11_01_0104 - 781471-781888,781994-782101,782195-782511                 33   0.28 
08_01_0090 - 649631-651162,653189-655019,655313-655365,655731-65...    29   3.5  
06_01_0906 + 6990892-6991615,6992480-6992679,6992822-6993002,699...    29   3.5  
12_01_0205 - 1540849-1541245,1541361-1541631,1541964-1542196,154...    28   6.1  
05_03_0170 - 9132207-9133010,9133232-9133894                           28   8.0  

>01_01_0855 -
           6666854-6666969,6667107-6667230,6667679-6667849,
           6668171-6668276,6668356-6668532,6669213-6669442
          Length = 307

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 24/80 (30%), Positives = 34/80 (42%)
 Frame = +3

Query: 450 CSSVAFKNPQHTILGHTEDAFTETLNHFYIMSAHIIPTPEDREHGAVEERFSSLCYAGHM 629
           CS V        I  H EDA    L H Y++ A    +P+          F++  YAG +
Sbjct: 109 CSDVLIVGESAAIAAHNEDANVALLGHTYVVKA---TSPDG------SSSFTAYTYAGEL 159

Query: 630 PGYTMGYNENGMVFSINTLS 689
           P    G+N NG+  S   +S
Sbjct: 160 PTCAFGFNSNGVRVSSPAMS 179


>12_01_0104 - 816185-816602,816710-816817,816910-817037
          Length = 217

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 558 PTPEDREHGAVEERFSSLCYAGHMPGYTMGYN-ENGMVFSINT 683
           PT E   H   +ERF +LC   +MP Y + +  E    F +N+
Sbjct: 151 PTLEHEAHEVQDERFENLCMVQNMPEYLIDFELERAFEFIVNS 193


>11_01_0104 - 781471-781888,781994-782101,782195-782511
          Length = 280

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 558 PTPEDREHGAVEERFSSLCYAGHMPGYTMGYN-ENGMVFSINT 683
           PT E   H   +ERF +LC   +MP Y + +  E    F +N+
Sbjct: 214 PTLEHEAHEVQDERFENLCMVQNMPEYLIDFELERAFEFIVNS 256


>08_01_0090 -
           649631-651162,653189-655019,655313-655365,655731-655735,
           656209-656411,656837-657292,657718-657805,657917-658017,
           658404-658631,659128-659445,659528-659812,660148-660711
          Length = 1887

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 362 SFLSAIPPANG*LDWNHQRQPRPTERHRRLQFCRLQEPT 478
           S L+A  P++   +W HQ Q RP+  HR+      +EPT
Sbjct: 642 SQLAAAEPSDR-PEWTHQFQERPSSSHRKDDGAANKEPT 679


>06_01_0906 +
           6990892-6991615,6992480-6992679,6992822-6993002,
           6993855-6994046,6994492-6994724,6995537-6995638,
           6995776-6995826,6996234-6996338,6997287-6997353,
           6997946-6997962
          Length = 623

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 372 QLFLLQMDDLIGTINDNHVPRNDTGGCSSVAFKNPQHTILGHTEDAF-TETLNHF 533
           +L  LQ+D  I + N      ND G C  +AF++ +H  + +      T  +NHF
Sbjct: 303 ELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHEDVENIGYVIPTPVINHF 357


>12_01_0205 -
           1540849-1541245,1541361-1541631,1541964-1542196,
           1542339-1542601,1542739-1542915,1543032-1543212,
           1543273-1543392,1543513-1543629,1544586-1544645,
           1545103-1545224,1545374-1545541
          Length = 702

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 315 GIASPC*PGSYRTHSGQYQFCIRA 244
           G+A+P  PGS+ T S  YQF  RA
Sbjct: 418 GLATPGQPGSWVTESKNYQFWTRA 441


>05_03_0170 - 9132207-9133010,9133232-9133894
          Length = 488

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +2

Query: 551 HHSNSRRQGARGSRGTVLVFMLRWSHARVHHGLQ*KRNGVFHQHAQ 688
           H    RR+G RG  GTV      W  AR+ HG   +R+G     A+
Sbjct: 26  HRQAPRRRGRRGGGGTV----KSWVRARMEHGR--RRDGAAPSRAE 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,313,656
Number of Sequences: 37544
Number of extensions: 456033
Number of successful extensions: 1163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)