Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2h16
         (404 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    28   0.48 
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    27   1.1  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    25   5.9  

>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 28.3 bits (60), Expect = 0.48
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = +3

Query: 111 VPQKYCLMRSSSSNHGKQMTLLTTKRTG---NYRTESI 215
           VP   C + SS+S+H + +TLL +K +    N+R E++
Sbjct: 16  VPLAICYIDSSTSSHDEYLTLLQSKVSAPDKNFRDETV 53


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 15/54 (27%), Positives = 33/54 (61%)
 Frame = +3

Query: 57  LYTLQLRISLI*LHNIYFVPQKYCLMRSSSSNHGKQMTLLTTKRTGNYRTESIA 218
           L T ++ ++LI +  ++ +   +  M++ +S+HGKQ T ++   TGN+   ++A
Sbjct: 68  LVTHKVILTLIAVPVVFAISIPFIGMQTPASSHGKQTTQVS---TGNWSKNAVA 118


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +2

Query: 251 NRLLTKRKRVSSLHLM--LFQASLIKCLSLSFLYCHGPNEETIKDISRKWKK 400
           NRL + R  +   H +  +  A LI C+S   +   G +EE IK     +KK
Sbjct: 764 NRLASGRTAIVIAHRLSTITNADLILCISNGRIVETGTHEELIKRDGGAYKK 815


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,388,972
Number of Sequences: 5004
Number of extensions: 21710
Number of successful extensions: 39
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)