Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2h16
         (404 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1054 + 29992101-29993032,29995378-29995401,29996790-29997423     29   1.4  
02_01_0273 + 1822370-1822503,1822913-1823258,1823393-1823635,182...    27   7.5  
03_06_0302 - 32981404-32981538,32981619-32981678,32981800-329818...    26   9.9  

>03_05_1054 + 29992101-29993032,29995378-29995401,29996790-29997423
          Length = 529

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = +2

Query: 206 RIYCSFEF*LNFQ*TNRLLTKRKRVSSLHLMLFQASLIKCLSLSFLYCHGPNEETIKDIS 385
           R+  S    L+ + T  +  K +R++    +  +  +   L   F+ C+GP E  + D+S
Sbjct: 446 RVVVSSAVELDARQTELIARKMRRITGFASLTIENVVDPSLIAGFVVCYGPGESHVIDLS 505

Query: 386 RKWK 397
            K K
Sbjct: 506 VKGK 509


>02_01_0273 +
           1822370-1822503,1822913-1823258,1823393-1823635,
           1824212-1824268,1824407-1824487,1824725-1824786,
           1824990-1826004
          Length = 645

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -3

Query: 153 GWNYWIALNNTFEVRNRYCATKLKI-SAIVRYRGLG 49
           GW   +    T E+RN +C  KL + SA+ R+   G
Sbjct: 568 GWKPTMVGVETCEMRNLFCCAKLVVKSALARHESRG 603


>03_06_0302 -
           32981404-32981538,32981619-32981678,32981800-32981877,
           32982264-32982341,32982516-32982592,32983271-32983445,
           32983532-32983678,32984407-32984496
          Length = 279

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 117 QKYCLMRSSSSNHGKQMTLLTTKRTGNYRTESIA 218
           ++  L+R+ +  HG ++ LLTT  T   R + IA
Sbjct: 147 EETALLRNEAVMHGIELVLLTTPTTPTERMKEIA 180


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,060,482
Number of Sequences: 37544
Number of extensions: 113920
Number of successful extensions: 197
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)