Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2h14
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    28   1.5  
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            27   2.0  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   4.7  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   4.7  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   4.7  

>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +3

Query: 381 HAFVSSLHRRRRILCKPLGDVNSNYILEQNIRENGPTSHECFFR*ISDTLSR 536
           +A + SL  R R   KPL D N  Y ++     +  +  EC +  + D + +
Sbjct: 804 NALLGSLRARYRKFKKPLIDFNDIYCVDPETGHSYRSREECHYEFVDDVVKQ 855


>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = -3

Query: 549 IIAQNVIRCR----IFIEKNTHVRSGRFP*CFVQEYSCY*HRPGVYR 421
           I+AQN    +    I  +K+ H+R  RFP  FV E  C  H   V R
Sbjct: 185 IVAQNPQNSKEEIIITSDKDEHIRISRFPNAFVIEGFCLGHEDFVSR 231


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 435  GDVNSNYILEQNIRENG 485
            GDV+SNY+   NI E G
Sbjct: 1097 GDVDSNYVTTMNISEKG 1113


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 21/85 (24%), Positives = 39/85 (45%)
 Frame = +1

Query: 307  SLSQLTIEERVPLKIQAFYNITPRLMPSSPHYIVEEEFSVNPWAMLIATIFLNKTSGKTA 486
            +LSQL   E++        N+TP  +P   HYIV +  S     + +   FL +   K++
Sbjct: 877  NLSQLNFNEKLK---DVKDNLTPAYLPWFSHYIVTQRVSREANFLSLYGKFLEEL--KSS 931

Query: 487  RPHMSVFFDEYPTPYHVLSDNPSSI 561
              +  VF D       ++++N  ++
Sbjct: 932  DLYKIVFRDTLQAILDIMNNNAETL 956


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +1

Query: 412  EEFSVNPWAMLIATIFLNKTSGKTARPHMSVFFDEYPTPYHVLSDNPSSIE 564
            EEF+++ W ++++ +     SGKT+R  +     E         D+ SS+E
Sbjct: 1553 EEFALHEWVVMLSPLDAVYWSGKTSRKSLVQKVSERLQEQASEKDDKSSVE 1603


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,033,140
Number of Sequences: 5004
Number of extensions: 64397
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)