Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2h14
         (716 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0005 - 193214-193228,193659-193776,193876-194072,194534-19...    89   4e-18
06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336...    29   3.7  
05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,364...    29   3.7  
04_01_0303 + 4132988-4133184,4133701-4134202,4134261-4134638,413...    28   6.4  

>09_01_0005 -
           193214-193228,193659-193776,193876-194072,194534-195493
          Length = 429

 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 39/111 (35%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
 Frame = +1

Query: 385 PSSPHYIVEEEFSVNPWAMLIATIFLNKTSGKTARPHMSVFFDEYPTPYHVLSDNPSSIE 564
           P SPH +++E+++ +PW +++  + LN T GK  R  +  FF  YP      S +P  + 
Sbjct: 288 PRSPHKLLQEKYASDPWKVIVICMLLNLTQGKQVRRKVKGFFKRYPDAQTAFSADPEKMA 347

Query: 565 RFFDTLGL-RKRGHMIWKLSYQFVSSKWCRASDLYGIGKYGEDAYRIFCLG 714
           ++   LGL R + + I + S  +V  +W   ++L G+GKY  DAY IFC G
Sbjct: 348 KYLAPLGLQRVKVNRIQRFSKAYVEEEWTYITELCGVGKYAADAYAIFCAG 398


>06_01_0474 -
           3362734-3362827,3363179-3363366,3363458-3363700,
           3363820-3364098,3364189-3364386,3364475-3365110,
           3365209-3365463,3365579-3365685,3365770-3369566,
           3369677-3370166,3370918-3371308,3371481-3371573,
           3371687-3371810,3372544-3372791
          Length = 2380

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 301 YLHLQWNFDLDPVRNLNFAHQKQ 233
           YLHL +NF+L PV+ L    +K+
Sbjct: 529 YLHLDYNFNLKPVKTLTTKERKK 551


>05_01_0460 -
           3644229-3644420,3644623-3644865,3644959-3645237,
           3645328-3645525,3645614-3646249,3646352-3646606,
           3646718-3646824,3646909-3650705,3650816-3651305,
           3652043-3652433,3652621-3652713,3652818-3652941,
           3653871-3654118
          Length = 2350

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 301 YLHLQWNFDLDPVRNLNFAHQKQ 233
           YLHL +NF+L PV+ L    +K+
Sbjct: 529 YLHLDYNFNLKPVKTLTTKERKK 551


>04_01_0303 +
           4132988-4133184,4133701-4134202,4134261-4134638,
           4134657-4135301
          Length = 573

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 553 SSIERFFDTLGLRKRGHMIWKLSYQFVSSKWCRAS 657
           SSIE   + +G +K+ H + +L+ +F   + CR S
Sbjct: 227 SSIENVKEVMGYQKKHHPMTRLTRKFSQKRQCRRS 261


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,545,276
Number of Sequences: 37544
Number of extensions: 402758
Number of successful extensions: 748
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)