Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2h14
(716 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR450305-1|CAG29301.1| 574|Homo sapiens MBD4 protein. 93 7e-19
BC011752-1|AAH11752.1| 574|Homo sapiens MBD4 protein protein. 93 7e-19
AM180876-1|CAJ55826.1| 262|Homo sapiens putative methyl-CpG bin... 93 7e-19
AF494057-1|AAM00008.1| 580|Homo sapiens methyl-CpG binding doma... 93 7e-19
AF120999-1|AAD50374.1| 580|Homo sapiens methyl-CpG binding prot... 93 7e-19
AF114784-1|AAD22195.1| 580|Homo sapiens methyl-CpG binding endo... 93 7e-19
AF072250-1|AAC68879.1| 580|Homo sapiens methyl-CpG binding prot... 93 7e-19
AF532602-1|AAP97338.1| 540|Homo sapiens methyl-CpG binding doma... 71 6e-12
AY033611-1|AAK55486.1| 165|Homo sapiens placenta immunoregulato... 30 9.5
>CR450305-1|CAG29301.1| 574|Homo sapiens MBD4 protein.
Length = 574
Score = 93.5 bits (222), Expect = 7e-19
Identities = 52/134 (38%), Positives = 76/134 (56%), Gaps = 1/134 (0%)
Frame = +1
Query: 313 SQLTIEERVPLKIQAFYNITPRLMPSSPHYIVEEEFSVNPWAMLIATIFLNKTSGKTARP 492
S+ E P + +AF TP P SP +V+E +PW +LIATIFLN+TSGK A P
Sbjct: 414 SKYNKEALSPPRRKAFKKWTP---PRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIP 470
Query: 493 HMSVFFDEYPTPYHVLSDNPSSIERFFDTLGLRK-RGHMIWKLSYQFVSSKWCRASDLYG 669
+ F ++YP+ + + + LGL R I K S ++++ +W +L+G
Sbjct: 471 VLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHG 530
Query: 670 IGKYGEDAYRIFCL 711
IGKYG D+YRIFC+
Sbjct: 531 IGKYGNDSYRIFCV 544
>BC011752-1|AAH11752.1| 574|Homo sapiens MBD4 protein protein.
Length = 574
Score = 93.5 bits (222), Expect = 7e-19
Identities = 52/134 (38%), Positives = 76/134 (56%), Gaps = 1/134 (0%)
Frame = +1
Query: 313 SQLTIEERVPLKIQAFYNITPRLMPSSPHYIVEEEFSVNPWAMLIATIFLNKTSGKTARP 492
S+ E P + +AF TP P SP +V+E +PW +LIATIFLN+TSGK A P
Sbjct: 414 SKYNKEALSPPRRKAFKKWTP---PRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIP 470
Query: 493 HMSVFFDEYPTPYHVLSDNPSSIERFFDTLGLRK-RGHMIWKLSYQFVSSKWCRASDLYG 669
+ F ++YP+ + + + LGL R I K S ++++ +W +L+G
Sbjct: 471 VLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHG 530
Query: 670 IGKYGEDAYRIFCL 711
IGKYG D+YRIFC+
Sbjct: 531 IGKYGNDSYRIFCV 544
>AM180876-1|CAJ55826.1| 262|Homo sapiens putative methyl-CpG
binding protein protein.
Length = 262
Score = 93.5 bits (222), Expect = 7e-19
Identities = 52/134 (38%), Positives = 76/134 (56%), Gaps = 1/134 (0%)
Frame = +1
Query: 313 SQLTIEERVPLKIQAFYNITPRLMPSSPHYIVEEEFSVNPWAMLIATIFLNKTSGKTARP 492
S+ E P + +AF TP P SP +V+E +PW +LIATIFLN+TSGK A P
Sbjct: 102 SKYNKEALSPPRRKAFKKWTP---PRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIP 158
Query: 493 HMSVFFDEYPTPYHVLSDNPSSIERFFDTLGLRK-RGHMIWKLSYQFVSSKWCRASDLYG 669
+ F ++YP+ + + + LGL R I K S ++++ +W +L+G
Sbjct: 159 VLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHG 218
Query: 670 IGKYGEDAYRIFCL 711
IGKYG D+YRIFC+
Sbjct: 219 IGKYGNDSYRIFCV 232
>AF494057-1|AAM00008.1| 580|Homo sapiens methyl-CpG binding domain
protein 4 protein.
Length = 580
Score = 93.5 bits (222), Expect = 7e-19
Identities = 52/134 (38%), Positives = 76/134 (56%), Gaps = 1/134 (0%)
Frame = +1
Query: 313 SQLTIEERVPLKIQAFYNITPRLMPSSPHYIVEEEFSVNPWAMLIATIFLNKTSGKTARP 492
S+ E P + +AF TP P SP +V+E +PW +LIATIFLN+TSGK A P
Sbjct: 420 SKYNKEALSPPRRKAFKKWTP---PRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIP 476
Query: 493 HMSVFFDEYPTPYHVLSDNPSSIERFFDTLGLRK-RGHMIWKLSYQFVSSKWCRASDLYG 669
+ F ++YP+ + + + LGL R I K S ++++ +W +L+G
Sbjct: 477 VLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHG 536
Query: 670 IGKYGEDAYRIFCL 711
IGKYG D+YRIFC+
Sbjct: 537 IGKYGNDSYRIFCV 550
>AF120999-1|AAD50374.1| 580|Homo sapiens methyl-CpG binding protein
4 protein.
Length = 580
Score = 93.5 bits (222), Expect = 7e-19
Identities = 52/134 (38%), Positives = 76/134 (56%), Gaps = 1/134 (0%)
Frame = +1
Query: 313 SQLTIEERVPLKIQAFYNITPRLMPSSPHYIVEEEFSVNPWAMLIATIFLNKTSGKTARP 492
S+ E P + +AF TP P SP +V+E +PW +LIATIFLN+TSGK A P
Sbjct: 420 SKYNKEALSPPRRKAFKKWTP---PRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIP 476
Query: 493 HMSVFFDEYPTPYHVLSDNPSSIERFFDTLGLRK-RGHMIWKLSYQFVSSKWCRASDLYG 669
+ F ++YP+ + + + LGL R I K S ++++ +W +L+G
Sbjct: 477 VLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHG 536
Query: 670 IGKYGEDAYRIFCL 711
IGKYG D+YRIFC+
Sbjct: 537 IGKYGNDSYRIFCV 550
>AF114784-1|AAD22195.1| 580|Homo sapiens methyl-CpG binding
endonuclease protein.
Length = 580
Score = 93.5 bits (222), Expect = 7e-19
Identities = 52/134 (38%), Positives = 76/134 (56%), Gaps = 1/134 (0%)
Frame = +1
Query: 313 SQLTIEERVPLKIQAFYNITPRLMPSSPHYIVEEEFSVNPWAMLIATIFLNKTSGKTARP 492
S+ E P + +AF TP P SP +V+E +PW +LIATIFLN+TSGK A P
Sbjct: 420 SKYNKEALSPPRRKAFKKWTP---PRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIP 476
Query: 493 HMSVFFDEYPTPYHVLSDNPSSIERFFDTLGLRK-RGHMIWKLSYQFVSSKWCRASDLYG 669
+ F ++YP+ + + + LGL R I K S ++++ +W +L+G
Sbjct: 477 VLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHG 536
Query: 670 IGKYGEDAYRIFCL 711
IGKYG D+YRIFC+
Sbjct: 537 IGKYGNDSYRIFCV 550
>AF072250-1|AAC68879.1| 580|Homo sapiens methyl-CpG binding protein
MBD4 protein.
Length = 580
Score = 93.5 bits (222), Expect = 7e-19
Identities = 52/134 (38%), Positives = 76/134 (56%), Gaps = 1/134 (0%)
Frame = +1
Query: 313 SQLTIEERVPLKIQAFYNITPRLMPSSPHYIVEEEFSVNPWAMLIATIFLNKTSGKTARP 492
S+ E P + +AF TP P SP +V+E +PW +LIATIFLN+TSGK A P
Sbjct: 420 SKYNKEALSPPRRKAFKKWTP---PRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIP 476
Query: 493 HMSVFFDEYPTPYHVLSDNPSSIERFFDTLGLRK-RGHMIWKLSYQFVSSKWCRASDLYG 669
+ F ++YP+ + + + LGL R I K S ++++ +W +L+G
Sbjct: 477 VLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHG 536
Query: 670 IGKYGEDAYRIFCL 711
IGKYG D+YRIFC+
Sbjct: 537 IGKYGNDSYRIFCV 550
>AF532602-1|AAP97338.1| 540|Homo sapiens methyl-CpG binding domain
protein 4 variant protein.
Length = 540
Score = 70.5 bits (165), Expect = 6e-12
Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
Frame = +1
Query: 313 SQLTIEERVPLKIQAFYNITPRLMPSSPHYIVEEEFSVNPWAMLIATIFLNKTSGKTARP 492
S+ E P + +AF TP P SP +V+E +PW +LIATIFLN+TSGK A P
Sbjct: 420 SKYNKEALSPPRRKAFKKWTP---PRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIP 476
Query: 493 HMSVFFDEYPTPYHVLSDNPSSIERFFDTLGLRK-RGHMIWKLSYQFVSSKWCRASDLYG 669
+ F ++YP+ + + + LGL R I K S ++++ +W +L+G
Sbjct: 477 VLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHG 536
Query: 670 IG 675
IG
Sbjct: 537 IG 538
>AY033611-1|AAK55486.1| 165|Homo sapiens placenta immunoregulatory
factor PLIF protein.
Length = 165
Score = 29.9 bits (64), Expect = 9.5
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = -3
Query: 582 QSIKKPFY*RWIIAQNVIRCRIFIEKNTHVRSGRFP*CFVQEYSCY*H 439
Q IKKP W N + C + +EKN + FP SC+ H
Sbjct: 84 QDIKKPDCDDWESGLNAMECALHLEKNVNQSLLEFPSPISPSPSCWHH 131
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,866,868
Number of Sequences: 237096
Number of extensions: 2430473
Number of successful extensions: 3131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3123
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8399192100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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