Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2h14
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (spli...    29   3.3  
U28412-6|AAC46596.2|  489|Caenorhabditis elegans Hypothetical pr...    29   4.4  
L23651-4|AAU87828.2|  294|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AL132943-10|CAB81984.1|  266|Caenorhabditis elegans Hypothetical...    28   5.8  
AC025726-6|AAK73923.2|  238|Caenorhabditis elegans Hypothetical ...    28   5.8  

>L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp
           (splicing factor) relatedprotein 8 protein.
          Length = 2329

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 301 YLHLQWNFDLDPVRNLNFAHQKQ 233
           YLHL +NF+L PV+ L    +K+
Sbjct: 507 YLHLDYNFNLKPVKTLTTKERKK 529


>U28412-6|AAC46596.2|  489|Caenorhabditis elegans Hypothetical
           protein T19C3.5 protein.
          Length = 489

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 457 FLNKTSGKTARPHMSVFFDEYPTPYHVLSD 546
           F  K   +    H+ +FF  Y TPY V+S+
Sbjct: 332 FFKKLRNEYPNNHVDLFFHTYSTPYFVMSE 361


>L23651-4|AAU87828.2|  294|Caenorhabditis elegans Hypothetical
           protein C29E4.13 protein.
          Length = 294

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 216 KYNIYSCF*CAKFRFLTGSKSKFH*RCRY 302
           KY  Y CF C K  F T  + +FH   R+
Sbjct: 141 KYRPYRCFHCKKDGFYTEEEGRFHLSTRH 169


>AL132943-10|CAB81984.1|  266|Caenorhabditis elegans Hypothetical
           protein Y116F11B.14 protein.
          Length = 266

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 405 RRRRILCKPLGDVNSNY--ILEQNIRENGPTSHECF 506
           R R ++ +P+  V + +  I  QN+R  GP +H+ F
Sbjct: 226 RIRSLVARPINSVKNGFAWISAQNLRRRGPRNHQDF 261


>AC025726-6|AAK73923.2|  238|Caenorhabditis elegans Hypothetical
           protein Y71G12B.22 protein.
          Length = 238

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 405 RRRRILCKPLGDVNSNY--ILEQNIRENGPTSHECF 506
           R R ++ +P+  V + +  I  QN+R  GP +H+ F
Sbjct: 198 RIRSLVARPINSVKNGFAWISAQNLRRRGPRNHQDF 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,957,405
Number of Sequences: 27780
Number of extensions: 366734
Number of successful extensions: 789
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)