Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2h14
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    29   0.058
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   1.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   1.2  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.8  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          21   8.8  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 28.7 bits (61), Expect = 0.058
 Identities = 13/30 (43%), Positives = 22/30 (73%)
 Frame = +3

Query: 384 AFVSSLHRRRRILCKPLGDVNSNYILEQNI 473
           AFV++++RR++ +  PL  VNS YIL+  +
Sbjct: 313 AFVNTIYRRKKTV--PLKKVNSKYILKSTL 340


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 634 SSKWCRASDLYGIGKYGEDAYRIF 705
           S+ W   S +Y  G YGE    +F
Sbjct: 135 SANWSYVSTVYSEGSYGEYGIEVF 158


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 634 SSKWCRASDLYGIGKYGEDAYRIF 705
           S+ W   S +Y  G YGE    +F
Sbjct: 225 SANWSYVSTVYSEGSYGEYGIEVF 248


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +1

Query: 289 EDADMLSLSQLTIEERVPLKIQAF 360
           +D D+L   +LTI+ + P++++ F
Sbjct: 146 QDGDILYSMRLTIKAKCPMELRNF 169


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +1

Query: 601 HMIWKLSYQFVSSKWCRASDLYGIGKYGEDAYRIFC 708
           H +   S+ ++ +       L+G G YG +A  + C
Sbjct: 14  HAVILASFVWIYALSLSLPPLFGWGSYGPEAGNVSC 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,362
Number of Sequences: 438
Number of extensions: 4433
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)