Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2h13
         (690 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9W4L1 Cluster: Mitochondrial 39S ribosomal protein L33...    98   2e-19
UniRef50_O75394 Cluster: Mitochondrial 39S ribosomal protein L33...    51   2e-05
UniRef50_Q3SZ47 Cluster: Mitochondrial 39S ribosomal protein L33...    50   7e-05
UniRef50_Q7YTL0 Cluster: Putative uncharacterized protein; n=3; ...    45   0.002
UniRef50_UPI000155C5F1 Cluster: PREDICTED: hypothetical protein;...    41   0.025
UniRef50_A7RP07 Cluster: Predicted protein; n=1; Nematostella ve...    36   0.93 

>UniRef50_Q9W4L1 Cluster: Mitochondrial 39S ribosomal protein L33;
           n=6; Endopterygota|Rep: Mitochondrial 39S ribosomal
           protein L33 - Drosophila melanogaster (Fruit fly)
          Length = 64

 Score = 98.3 bits (234), Expect = 2e-19
 Identities = 48/63 (76%), Positives = 52/63 (82%)
 Frame = +1

Query: 133 MFLTNVLFKKAKSKYIMVIIESAVSGHQKTRIRDRLADKMESIEFDPYIQQESLYKECKK 312
           M LTNVLFKK KSK IMV++ES VSGHQ    RDRLADK+E I FDPYIQQESLY+E KK
Sbjct: 1   MRLTNVLFKKVKSKRIMVVLESVVSGHQFNAFRDRLADKLEIIRFDPYIQQESLYRERKK 60

Query: 313 IRS 321
           IRS
Sbjct: 61  IRS 63


>UniRef50_O75394 Cluster: Mitochondrial 39S ribosomal protein L33;
           n=13; Euteleostomi|Rep: Mitochondrial 39S ribosomal
           protein L33 - Homo sapiens (Human)
          Length = 65

 Score = 51.2 bits (117), Expect = 2e-05
 Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
 Frame = +1

Query: 133 MFLTNVLFKKAKSKYIMV-IIESAVSGHQKTRIRDRLADKMESIEFDPYIQQESLYKECK 309
           MFL+ V F K+KSK I+V ++  A +G      R+RL +K+  + +DP ++Q  L+ E K
Sbjct: 1   MFLSAVFFAKSKSKNILVRMVSEAGTGFCFNTKRNRLREKLTLLHYDPVVKQRVLFVEKK 60

Query: 310 KIRSM 324
           KIRS+
Sbjct: 61  KIRSL 65


>UniRef50_Q3SZ47 Cluster: Mitochondrial 39S ribosomal protein L33;
           n=5; Laurasiatheria|Rep: Mitochondrial 39S ribosomal
           protein L33 - Bos taurus (Bovine)
          Length = 65

 Score = 49.6 bits (113), Expect = 7e-05
 Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
 Frame = +1

Query: 133 MFLTNVLFKKAKSKYIMV-IIESAVSGHQKTRIRDRLADKMESIEFDPYIQQESLYKECK 309
           MFL+ V F K+KSK I+V ++  A +G      R RL +K+  + +DP ++++ L+ E K
Sbjct: 1   MFLSAVTFAKSKSKTILVKMVSQAGTGFSFNTKRSRLWEKLTLLHYDPVVKKKVLFVEQK 60

Query: 310 KIRSM 324
           KIRS+
Sbjct: 61  KIRSL 65


>UniRef50_Q7YTL0 Cluster: Putative uncharacterized protein; n=3;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 71

 Score = 45.2 bits (102), Expect = 0.002
 Identities = 18/52 (34%), Positives = 34/52 (65%)
 Frame = +1

Query: 163 AKSKYIMVIIESAVSGHQKTRIRDRLADKMESIEFDPYIQQESLYKECKKIR 318
           AKSKY++V + S ++G  +  +R+R A+K   I +DP   +  L++E K+++
Sbjct: 3   AKSKYVIVQLASVITGSTRVWVRERAAEKFAGIFYDPAYGKSCLFEEVKRVK 54


>UniRef50_UPI000155C5F1 Cluster: PREDICTED: hypothetical protein;
           n=1; Ornithorhynchus anatinus|Rep: PREDICTED:
           hypothetical protein - Ornithorhynchus anatinus
          Length = 153

 Score = 41.1 bits (92), Expect = 0.025
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = +1

Query: 154 FKKAKSKYIMV-IIESAVSGHQKTRIRDRLADKMESIEFDPYIQQESLYKECKKIRSM 324
           F K+KSK ++V ++  A +G      R RL DK+  +  DP + +  L+ E KKIRS+
Sbjct: 96  FAKSKSKTLLVKMVSQAGTGFSFNTKRSRLQDKLVLLHHDPIVNKRVLFVEKKKIRSI 153


>UniRef50_A7RP07 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 100

 Score = 35.9 bits (79), Expect = 0.93
 Identities = 16/50 (32%), Positives = 31/50 (62%)
 Frame = +1

Query: 178 IMVIIESAVSGHQKTRIRDRLADKMESIEFDPYIQQESLYKECKKIRSMK 327
           I+ ++  A +G+  T  R+RL DK++ +++DP ++Q  L+ E K  +  K
Sbjct: 50  IVRLVSMAGTGYFYTMTRNRLKDKLQLMKYDPVVRQHVLFTEQKVKKGKK 99


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 567,771,281
Number of Sequences: 1657284
Number of extensions: 10425129
Number of successful extensions: 23125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23119
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)