Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2h13
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|...    27   3.4  
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    27   3.4  

>SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 467 LCFLFDAQRSCKNLLRPSKKSFHVVVPH 550
           +C+ F A R    L+RPS  S     PH
Sbjct: 250 ICWSFQAMRPHNELIRPSSTSLSKYFPH 277


>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 207 WTPKDEDTRSSC**DGVYRVRSIYSTRK 290
           W+P +++  SSC  DG +R+  + + +K
Sbjct: 299 WSPSEKNVFSSCSCDGTFRIWDVRNKQK 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,566,340
Number of Sequences: 5004
Number of extensions: 51169
Number of successful extensions: 119
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)