Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2h12
         (371 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0303 - 23958989-23960563,23962628-23962864,23963250-239634...    30   0.67 
08_01_0577 + 5132876-5132894,5134352-5134845,5134937-5135162,513...    29   1.5  
09_04_0102 + 14618475-14618729,14620446-14620510,14620624-146207...    28   2.0  
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509...    27   3.6  
04_03_0914 + 20788103-20789642,20790036-20790529                       27   6.2  
05_07_0143 + 28000038-28000211,28002217-28002230,28002713-280027...    26   8.2  
03_06_0771 - 36152554-36153215,36153320-36153818,36153924-36153956     26   8.2  

>05_05_0303 -
           23958989-23960563,23962628-23962864,23963250-23963449,
           23964088-23964250,23964348-23964554,23964667-23964798
          Length = 837

 Score = 29.9 bits (64), Expect = 0.67
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 21  HETPR-KTR*RCNFELTFYYVMSIWLYLFPIAVAVVMF 131
           H TP  +T  RC+  +++ Y    W+ LFP+ +  ++F
Sbjct: 331 HGTPCIRTILRCSIRMSYRYASENWVLLFPVLLLYLLF 368


>08_01_0577 +
           5132876-5132894,5134352-5134845,5134937-5135162,
           5135695-5135917,5136315-5136528,5136769-5136806,
           5136977-5137142
          Length = 459

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 81  MSIWLYLFPIAVAVVMFLLIGTICERRIEATFHHIME 191
           +  W  LFP+AVA  +  +  T+   ++  +F HI++
Sbjct: 163 LDFWKVLFPVAVAHTIGHVAATVSMSKVAVSFTHIIK 199


>09_04_0102 +
           14618475-14618729,14620446-14620510,14620624-14620774,
           14620894-14620971,14621065-14621154,14621547-14621669
          Length = 253

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 9/31 (29%), Positives = 23/31 (74%)
 Frame = +3

Query: 183 IMELRQAQIQRNEENVENVHAISACTGTCQP 275
           +++L + +I + E++++N+ +  ACTG+ +P
Sbjct: 56  LLQLVECRICQEEDSIKNLESPCACTGSLKP 86


>11_04_0439 +
           17749634-17749858,17750164-17750301,17750770-17750943,
           17751099-17751184,17751264-17751525,17751616-17751815,
           17753631-17754086,17754198-17754474,17754694-17754828,
           17754946-17755026,17756305-17756400,17756676-17756771,
           17756844-17756900,17756975-17757043,17757158-17757237,
           17758185-17758329,17758422-17758511,17758914-17758994,
           17759103-17759198,17759279-17759335,17759417-17759461,
           17759547-17759612,17760304-17760350,17762771-17762865,
           17763375-17763393,17763438-17763498,17763637-17763660
          Length = 1085

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 114 PQWETNTAKWT*HSRMLTQNYIVIAFF 34
           P+WETN   +  +++  T  Y V+AFF
Sbjct: 230 PEWETNLLDFFNNAQFRTSVYNVVAFF 256


>04_03_0914 + 20788103-20789642,20790036-20790529
          Length = 677

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 204 QIQRNEENVENVHAISACTGTC 269
           ++ +NE+N+ENV + S C   C
Sbjct: 365 KLPQNEQNIENVKSSSECDQVC 386


>05_07_0143 +
           28000038-28000211,28002217-28002230,28002713-28002788,
           28003304-28003865,28004476-28004761,28004848-28005118,
           28005478-28005633,28005871-28006368,28006809-28007093
          Length = 773

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 245 HLGLYWNLPTDHSATY 292
           H GL +NLP+D SA Y
Sbjct: 418 HSGLQYNLPSDSSAAY 433


>03_06_0771 - 36152554-36153215,36153320-36153818,36153924-36153956
          Length = 397

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = -1

Query: 185 DMMKGS--FYPPFTYGAD*EEHDHSHRNGKQIQP 90
           +MMK    ++PP+ +G     H H H  G Q  P
Sbjct: 313 EMMKRMHLYWPPYGHGYTSYYHHHHHHQGGQAHP 346


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,171,370
Number of Sequences: 37544
Number of extensions: 200294
Number of successful extensions: 549
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)