Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2h12
(371 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024817-2|AAU87810.1| 520|Caenorhabditis elegans Hypothetical ... 30 0.61
U42844-4|ABM01868.1| 739|Caenorhabditis elegans Hypothetical pr... 28 2.4
AF039049-3|AAB94251.2| 298|Caenorhabditis elegans Serpentine re... 28 2.4
Z68299-5|CAI46584.1| 111|Caenorhabditis elegans Hypothetical pr... 26 7.5
AF067943-4|AAC17661.1| 359|Caenorhabditis elegans Hypothetical ... 26 7.5
Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical pr... 26 9.9
Z77670-2|CAB01250.1| 588|Caenorhabditis elegans Hypothetical pr... 26 9.9
Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical p... 26 9.9
Z48009-4|CAA88084.1| 329|Caenorhabditis elegans Hypothetical pr... 26 9.9
AJ512335-1|CAD54509.1| 588|Caenorhabditis elegans trehalase pro... 26 9.9
AF098999-3|AAC68726.2| 445|Caenorhabditis elegans Hypothetical ... 26 9.9
>AC024817-2|AAU87810.1| 520|Caenorhabditis elegans Hypothetical
protein Y54G2A.38 protein.
Length = 520
Score = 29.9 bits (64), Expect = 0.61
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 69 FYYVMS-IWLYLFPIAVAVVMFLLIGTICERRIEAT 173
FY+V IW +LFP ++ V+ + I T C R I AT
Sbjct: 351 FYFVNEKIWKFLFPFSI--VLIIGITTFCARTILAT 384
>U42844-4|ABM01868.1| 739|Caenorhabditis elegans Hypothetical
protein C08A9.3 protein.
Length = 739
Score = 27.9 bits (59), Expect = 2.4
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 361 TLKNLCIYYYSCIFYVAFVFVLFVRCGVIGWQ 266
T +L +Y S IFY AF+++ R GV WQ
Sbjct: 471 TTIHLDMYTSSWIFYAAFMWIYSKRHGVRKWQ 502
>AF039049-3|AAB94251.2| 298|Caenorhabditis elegans Serpentine
receptor, class x protein66 protein.
Length = 298
Score = 27.9 bits (59), Expect = 2.4
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Frame = -2
Query: 349 LCIYYYSCIFYV--AFVFVLFVR---CGVIGW 269
LC Y Y C FY F+ F CG++GW
Sbjct: 136 LCFYEYLCHFYFDEKIRFLTFTNSPVCGIVGW 167
>Z68299-5|CAI46584.1| 111|Caenorhabditis elegans Hypothetical
protein T04B2.8 protein.
Length = 111
Score = 26.2 bits (55), Expect = 7.5
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -2
Query: 364 FTLKNLCIYYYSCIFYVAFVFVLFVRCGVIGWQVPVQAE 248
F L+ L +Y++ +F F+ L CGV P + +
Sbjct: 6 FGLEALNTFYFNLVFLCGFLGYLVFNCGVCDTASPAECQ 44
>AF067943-4|AAC17661.1| 359|Caenorhabditis elegans Hypothetical
protein F59B1.6 protein.
Length = 359
Score = 26.2 bits (55), Expect = 7.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 63 LTFYYVMSIWLYLFPIAVAVVMFLLI 140
L+ Y ++ IW++LF I V + +LI
Sbjct: 99 LSSYVLVIIWIFLFAITVFTMFIILI 124
>Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical
protein C47E8.8 protein.
Length = 1675
Score = 25.8 bits (54), Expect = 9.9
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 247 SRPVLELANRSLRNVRTTQKQTLHKKYTNNNKYINSSM*KK 369
S P+ ++ +S++ + K+T+HKK N + +SS KK
Sbjct: 528 SSPISSVSGKSIKLLTLQLKETMHKK----NSFFHSSYVKK 564
>Z77670-2|CAB01250.1| 588|Caenorhabditis elegans Hypothetical
protein W05E10.4 protein.
Length = 588
Score = 25.8 bits (54), Expect = 9.9
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 310 FVFVLFVRCGVIGWQVPVQAEMA*TFSTFSSFL 212
FVFVLF+ CG +G V+ + T ++ +SF+
Sbjct: 8 FVFVLFIICGPLG-SNQVEVHVCDTTNSNNSFI 39
>Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical
protein C47E8.8 protein.
Length = 1675
Score = 25.8 bits (54), Expect = 9.9
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 247 SRPVLELANRSLRNVRTTQKQTLHKKYTNNNKYINSSM*KK 369
S P+ ++ +S++ + K+T+HKK N + +SS KK
Sbjct: 528 SSPISSVSGKSIKLLTLQLKETMHKK----NSFFHSSYVKK 564
>Z48009-4|CAA88084.1| 329|Caenorhabditis elegans Hypothetical
protein AH6.6 protein.
Length = 329
Score = 25.8 bits (54), Expect = 9.9
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 72 YYVMSIWLYLFPIAVAVVMFLLIGTICERR 161
+ ++ +WLY FPI V + +L+ I R
Sbjct: 271 FNLLVVWLYAFPIVVLMFPVILVHQIRSSR 300
>AJ512335-1|CAD54509.1| 588|Caenorhabditis elegans trehalase
protein.
Length = 588
Score = 25.8 bits (54), Expect = 9.9
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 310 FVFVLFVRCGVIGWQVPVQAEMA*TFSTFSSFL 212
FVFVLF+ CG +G V+ + T ++ +SF+
Sbjct: 8 FVFVLFIICGPLG-SNQVEVHVCDTTNSNNSFI 39
>AF098999-3|AAC68726.2| 445|Caenorhabditis elegans Hypothetical
protein W04C9.3 protein.
Length = 445
Score = 25.8 bits (54), Expect = 9.9
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 6 LSASPHETPRKTR*RCNFELTFYYVMSIWLYLFPIAVAVVMF 131
+ +P ET R+ C TFY L++F +++ +V F
Sbjct: 377 MPGAPRETARRVSEPCVSVETFYISALAVLFVFVVSIGMVCF 418
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,096,843
Number of Sequences: 27780
Number of extensions: 188731
Number of successful extensions: 632
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -