Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2h10
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    27   2.1  
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa...    26   4.9  
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    26   4.9  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    25   8.6  

>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = -1

Query: 524 FKILIVATVLNKFNKVSSASFNTFKHSFKSQAAEGRRQFLSQDLPSREVV 375
           + +L++ ++L   NK++ + F   +HS   +  E + + L Q  P R +V
Sbjct: 567 WNLLVLYSLLQYENKLTVSQFTAMQHSEYEEPIESKEELLLQIGPRRFMV 616


>SPBC776.12c |hsk1||serine/threonine protein kinase
           Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 22/94 (23%), Positives = 37/94 (39%)
 Frame = +3

Query: 330 ILSEKETLADSILFIDDLPRWKILRQKLSPAFSSLRLKTMFEGIERSARDFVEFIENSGN 509
           +  E++T  DS   I ++    +   K       +  +   E IE   R FVE  EN   
Sbjct: 12  VTHEQQTDIDSECEITEVDDENVNENKSQEMIQDIPARDR-EEIENITRTFVELQENYRL 70

Query: 510 DQDLEEMPFNAIYKYTTGSIGAAVFGVDVDQNTL 611
            + + E  F+++YK      G  +   D+    L
Sbjct: 71  IEKIGEGTFSSVYKAEDLHYGRYINDWDIQSEVL 104


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
            Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 7/123 (5%)
 Frame = +3

Query: 300  DFQSFHSRGIILSEKETLADSILFIDDLPRWKI---LRQKLSPAFSSLRLKTMFEGIERS 470
            D +S  +R  I +E E     ILF DDL +      LR+++S  F  L+ K   E +E+ 
Sbjct: 1087 DLRSIMARFDISTEYEVYTAFILFKDDLAKTVNEYGLREEVSFQFDLLKKKYTQEYLEKC 1146

Query: 471  ARDFVEFIENSGNDQDLEE---MPFNAIYKYTTGSIGAAVFGVDVDQNTLDTPAL-NITR 638
            A       ++S  ++ +       ++  Y     S+G     V +    L +  L  ++R
Sbjct: 1147 ALSNQSAFDSSEYEERINSAVAATYDVTYDQRVKSVGNGTTEVLISFPYLFSSRLCQLSR 1206

Query: 639  KAL 647
            KA+
Sbjct: 1207 KAM 1209


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 453 EGIERSARDFVEFIENSGNDQDLEEMPFNAIYKYTTGSIGAAVFGVD-VDQNTLDTPALN 629
           + IER  RD+  F++N   D +L +   N +YK    +I  A   +D  D+   D P ++
Sbjct: 428 QDIERQERDYELFLQNLEEDPELRQ-GVN-LYKAPVKAIAVADTDMDEEDEVDEDIPQIS 485

Query: 630 I 632
           +
Sbjct: 486 V 486


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,804,414
Number of Sequences: 5004
Number of extensions: 54936
Number of successful extensions: 150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)