Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2h09
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc...    29   0.86 
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    28   1.5  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   2.0  

>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
           Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 227

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 20/51 (39%), Positives = 26/51 (50%)
 Frame = -1

Query: 346 PKFPIVFPELIRPKRHDLDQWWKYECERRATERANQ*NYSTQVRNHRCSQN 194
           PKF I+FPELI   R D+    K   E    E   Q  +ST V ++ C +N
Sbjct: 148 PKFLIMFPELIDKNREDIA---KAAAEAALIE--PQQIHSTPVSSNECKKN 193


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 210 IAAAKTIVLSLRNVALEQILMQSWPYKT 127
           I   K  +LSLR V+  +I   SW YKT
Sbjct: 853 IYIVKVPILSLRGVSFHRISGNSWQYKT 880


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = -2

Query: 291  ISGGNMSASAELLNAPTNEIIPLKFGIIAAAKTIVLSLR---NVALEQILMQSWPYKT 127
            +SG      AE +  P    IP++     A +T+  + R   N+A +Q    SW YKT
Sbjct: 4125 LSGRTYIEGAETVMGPCMNTIPVRIKFEGALQTLKKTSRMLINLAKQQHTPLSWIYKT 4182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,343,055
Number of Sequences: 5004
Number of extensions: 43634
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)