Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2h09
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0264 + 27263562-27264830 38 0.008
04_04_0819 - 28312667-28313219,28315157-28316430 34 0.13
01_05_0586 + 23443371-23444645 33 0.22
06_03_0915 - 25929433-25930893 32 0.39
11_01_0724 + 5981680-5981748,5982301-5982397,5982496-5982593,598... 31 0.67
05_07_0175 - 28164252-28164529,28165381-28166560 29 2.7
01_06_1400 - 37036957-37037705,37037809-37037995,37038108-370382... 29 2.7
06_01_1136 + 9407282-9407663,9408075-9408227,9408336-9408539,940... 29 3.6
02_05_0601 - 30278455-30278572,30280211-30280676,30280748-302809... 28 6.3
01_06_1540 - 38111557-38111985,38112087-38112311,38112494-381128... 28 8.3
>02_05_0264 + 27263562-27264830
Length = 422
Score = 37.9 bits (84), Expect = 0.008
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +2
Query: 197 LAAAMIPNLSGIISLVGAFSSSALALIFPPLIEIMTFWPDQLGKNDWK-FWKDIVIIVFG 373
L+A +PN + ++LVG+ L + P + F + W D+++++ G
Sbjct: 346 LSAMYVPNFTDFLALVGSSVCVLLGFVLPASFHLKVFGAEM----SWSGVLSDVLLVLLG 401
Query: 374 VTGFLFGTYTSI 409
++ +FGTYTS+
Sbjct: 402 LSLAVFGTYTSL 413
>04_04_0819 - 28312667-28313219,28315157-28316430
Length = 608
Score = 33.9 bits (74), Expect = 0.13
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Frame = +2
Query: 197 LAAAMIPNLSGIISLVGAFSSSALALIFPPLIEIMTF-----WPDQLGKNDWKFWKDIVI 361
L A ++PN + +SLVG+ L + P + F WP G D+ +
Sbjct: 349 LMAMLVPNFADFLSLVGSSVCVLLGFVLPAAFHLKVFGAEVGWPGLAG--------DVAV 400
Query: 362 IVFGVTGFLFGTYTSI 409
IV G + GT+TS+
Sbjct: 401 IVVGTALAVSGTWTSL 416
>01_05_0586 + 23443371-23444645
Length = 424
Score = 33.1 bits (72), Expect = 0.22
Identities = 19/72 (26%), Positives = 38/72 (52%)
Frame = +2
Query: 194 VLAAAMIPNLSGIISLVGAFSSSALALIFPPLIEIMTFWPDQLGKNDWKFWKDIVIIVFG 373
V+ A+ +P ++S +G+F S ++FP L + + D + + + I+++ G
Sbjct: 348 VVVASTVPFFGYLMSFIGSFLSVMATVLFPCLCYLKIYKADGIHRTEMVAIAGILLL--G 405
Query: 374 VTGFLFGTYTSI 409
V + GTYTS+
Sbjct: 406 VFVAVTGTYTSL 417
>06_03_0915 - 25929433-25930893
Length = 486
Score = 32.3 bits (70), Expect = 0.39
Identities = 21/62 (33%), Positives = 32/62 (51%)
Frame = +2
Query: 191 IVLAAAMIPNLSGIISLVGAFSSSALALIFPPLIEIMTFWPDQLGKNDWKFWKDIVIIVF 370
I L + MIPN+ GA + AL IFP LI + D+ GK+ K + + I++
Sbjct: 407 IYLGSTMIPNIWVAFKFTGATTGLALGFIFPALIALRL---DKEGKSLGKGERLLSIVML 463
Query: 371 GV 376
G+
Sbjct: 464 GL 465
>11_01_0724 +
5981680-5981748,5982301-5982397,5982496-5982593,
5983535-5983690,5983986-5984063,5984135-5984266,
5984856-5984936,5985442-5985510,5985597-5985686,
5986001-5986145,5986218-5986276,5986384-5986479,
5986561-5986628,5986704-5986803,5986910-5986966,
5987179-5987337
Length = 517
Score = 31.5 bits (68), Expect = 0.67
Identities = 12/30 (40%), Positives = 23/30 (76%)
Frame = -2
Query: 288 SGGNMSASAELLNAPTNEIIPLKFGIIAAA 199
+G +++ + +L AP++EI+P+KFG +A A
Sbjct: 112 AGNHVTITPDLSKAPSSEILPIKFGGLAKA 141
>05_07_0175 - 28164252-28164529,28165381-28166560
Length = 485
Score = 29.5 bits (63), Expect = 2.7
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 281 PPLIEIMTFWPDQLGKN 331
PPL+E FWPDQ+ N
Sbjct: 367 PPLMETYCFWPDQVNSN 383
>01_06_1400 -
37036957-37037705,37037809-37037995,37038108-37038205,
37039562-37039655
Length = 375
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 203 AAMIPNLSGIISLVGAFSSSALALIFPPLIEIMTFWPDQLGKNDW 337
AAM+P + +L+GAF L P + +TF P + G W
Sbjct: 294 AAMVPFFGDMNALIGAFGFLPLDFAVPAVFYNVTFKPSKKGAVFW 338
>06_01_1136 +
9407282-9407663,9408075-9408227,9408336-9408539,
9408709-9409174,9409434-9409575
Length = 448
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/71 (26%), Positives = 31/71 (43%)
Frame = +2
Query: 191 IVLAAAMIPNLSGIISLVGAFSSSALALIFPPLIEIMTFWPDQLGKNDWKFWKDIVIIVF 370
I L+A IP++ GA ++ +A IFP I + P + K W I +IV
Sbjct: 366 IFLSANFIPSIWDAFQFTGATAAVCIAFIFPAAITLRD--PHSIAKK-WDKILSIFMIVL 422
Query: 371 GVTGFLFGTYT 403
+ + Y+
Sbjct: 423 AIVSNVVAVYS 433
>02_05_0601 -
30278455-30278572,30280211-30280676,30280748-30280951,
30281065-30281220,30281336-30281738
Length = 448
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 191 IVLAAAMIPNLSGIISLVGAFSSSALALIFP 283
I LAA +PN+ GA ++ A+A IFP
Sbjct: 374 IFLAANFVPNIWDAFQFTGATAAVAIAYIFP 404
>01_06_1540 -
38111557-38111985,38112087-38112311,38112494-38112854,
38112965-38113058,38113136-38113369,38113891-38113945
Length = 465
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 197 LAAAMIPNLSGIISLVGAFSSSALALIFP 283
+ A MIP + ++ L+GAFS L + FP
Sbjct: 382 VVAMMIPFFNAVLGLLGAFSFWPLTVYFP 410
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,583,653
Number of Sequences: 37544
Number of extensions: 241904
Number of successful extensions: 592
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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