Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2h05
         (335 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    28   0.33 
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    27   1.0  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   3.1  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    24   7.1  
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    24   7.1  
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...    23   9.4  
SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom...    23   9.4  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    23   9.4  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    23   9.4  

>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 28.3 bits (60), Expect = 0.33
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 116 DKWLIHISLAGLDMGMGTGLG 54
           DKW I + LAG   G+G GLG
Sbjct: 88  DKWDIMLQLAGTITGIGAGLG 108


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 16  LWSVRTLRTMRPLP 57
           LW +RT+ T+RPLP
Sbjct: 315 LWDLRTVHTVRPLP 328


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +1

Query: 4   PLWSLWSVRTLRTMRPLPKPVPMPMSKPAK-EM*ISHLSSMQLSRSYE 144
           P+   W+       +  P P P P S+P+K  +  S  S   +S +YE
Sbjct: 281 PIKKAWASVAKSKKKVTPAPAPAPESEPSKPSIAPSQPSKTNVSAAYE 328


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 182 ETSSFPLSSAPQVS*LLDSCMLDKWL 105
           E S+FP S +P +  LL S    KW+
Sbjct: 419 EISNFPNSLSPSLLALLSSPYFTKWI 444


>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +1

Query: 7   LWSLWSVRTLRTMRPLPKPV 66
           +WS+W +R+L++   +  PV
Sbjct: 361 VWSVWDLRSLKSSSSVATPV 380


>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 131 DSCMLDKWLIHISLAGLD 78
           +SC L +W +   LAG+D
Sbjct: 454 NSCKLARWTVEALLAGVD 471


>SPBC29A3.16 |||ribosome biogenesis protein Rrs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 40  TMRPLPKPVPMPMSKP 87
           T+ PLP+  P+P  KP
Sbjct: 74  TVTPLPRAKPLPKPKP 89


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 151 GAEERGKELVSHQRHGGCQGDPVTDQ 228
           G +E  K L+SHQ HG   G   T++
Sbjct: 607 GPKEAYKYLLSHQFHGKGSGKAKTEK 632


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 49  PLPKPVPMPMSKPAKE 96
           P+P P P P + PA E
Sbjct: 395 PVPPPAPAPAAAPAAE 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 986,919
Number of Sequences: 5004
Number of extensions: 16263
Number of successful extensions: 43
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)