Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2h05
(335 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0432 + 21178662-21178798,21178973-21179033,21179260-211793... 31 0.31
04_04_1229 - 31906854-31907300,31907986-31908181,31908631-319087... 28 2.2
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127... 27 2.9
08_02_1582 + 28007169-28007188,28007278-28007312,28007945-280081... 27 3.8
06_03_1122 - 27775141-27775333,27775414-27775604,27775907-277770... 27 3.8
06_02_0096 - 11683368-11684581,11684705-11684773,11685356-116854... 27 3.8
02_05_0202 + 26708049-26709074 27 3.8
02_01_0485 + 3487578-3487635,3488281-3488399,3488600-3488698,348... 27 3.8
12_01_0442 + 3495333-3496484 26 6.6
03_02_0474 - 8759585-8759626,8759753-8759893,8760001-8760093,876... 26 6.6
09_03_0061 - 11967727-11967765,11967872-11967910,11967996-119682... 26 8.7
06_03_1054 + 27230571-27230879 26 8.7
01_05_0230 + 19543410-19543722,19544165-19544238 26 8.7
>05_04_0432 +
21178662-21178798,21178973-21179033,21179260-21179339,
21179650-21179794,21180411-21180620,21180956-21181004,
21181199-21181326
Length = 269
Score = 30.7 bits (66), Expect = 0.31
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 1 SPLWSLWSVRTLRTMRPL-PKPVPMPMSKPAKEM*ISHLSSM 123
SP SL S R L + PL P+P P +S PA ++ +SS+
Sbjct: 9 SPCCSLPSARVLPSRLPLLPRPAPAALSAPAARPVVARVSSL 50
>04_04_1229 -
31906854-31907300,31907986-31908181,31908631-31908756,
31909962-31910329,31910680-31910835,31910968-31911168,
31911230-31911375,31911439-31911865,31912527-31912627,
31913197-31913254
Length = 741
Score = 27.9 bits (59), Expect = 2.2
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -1
Query: 134 LDSCMLDKWLIHISLAGL-DMGMGTGLGKGR 45
+D+ +LDKW +H+ AG+ ++ + L K R
Sbjct: 154 IDAAVLDKWFVHVIKAGIKELSLEMSLCKKR 184
>02_01_0190 +
1276808-1278214,1278450-1278743,1278815-1279087,
1279204-1279336,1279425-1279551,1279788-1280284,
1280578-1280642,1280722-1280823,1281020-1281162,
1281761-1281816,1282214-1282869,1282975-1283165,
1283280-1283574,1283738-1283778,1284082-1284104,
1284173-1284369,1284472-1284581,1285309-1285639,
1285968-1286060,1286095-1286166,1286626-1286886
Length = 1788
Score = 27.5 bits (58), Expect = 2.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 1 SPLWSLWSVRTLRTMRPLPKPVPMPMSKPAK 93
SP+ L ++ ++R P PKP P P P +
Sbjct: 68 SPIAQLKTLASIRAPAPSPKPSPSPSPSPRR 98
>08_02_1582 +
28007169-28007188,28007278-28007312,28007945-28008130,
28008783-28008962,28009290-28009474,28009593-28009688,
28009888-28009933,28010054-28010160,28010893-28010994,
28011080-28011614,28012296-28012366,28012747-28012830
Length = 548
Score = 27.1 bits (57), Expect = 3.8
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +1
Query: 169 KELVSHQRHGGCQGD-PVTDQLVPPSKL--N*ARPECSITVYN 288
K L +HQR+G C G PV VP K+ EC I+V N
Sbjct: 134 KVLYAHQRNGRCHGVLPVVTAKVPVLKVIDKGTGVECDISVEN 176
>06_03_1122 -
27775141-27775333,27775414-27775604,27775907-27777099,
27777206-27777353,27777534-27777609,27777696-27777818,
27777886-27778050,27778169-27778259,27778580-27778664,
27778745-27778900,27778992-27779048,27779138-27779236,
27779381-27779499,27780145-27780202
Length = 917
Score = 27.1 bits (57), Expect = 3.8
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 4 PLWSLWSVRTLRTMRPLPKPVPMPMSKP 87
P SLW + L T P P P+ + +P
Sbjct: 356 PRVSLWEIEPLTTFPMYPSPFPLRLKRP 383
>06_02_0096 -
11683368-11684581,11684705-11684773,11685356-11685412,
11685553-11685609,11685758-11685817,11686770-11686893
Length = 526
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -3
Query: 276 NGALRSGLIQF-RRRYQLVRHGVTLTTP 196
NG G + F R Y L RH VT TTP
Sbjct: 324 NGYTMVGFLAFLRSAYSLPRHAVTRTTP 351
>02_05_0202 + 26708049-26709074
Length = 341
Score = 27.1 bits (57), Expect = 3.8
Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Frame = +1
Query: 49 PLPKPVPMPMSKPAKEM*ISHLSSMQLSRSYET*GAEERGKELVSHQR--HGGCQGDPV 219
P P P P P P K + ++ RSY+ G SH R GGC PV
Sbjct: 180 PPPSPAPAPAPVPEKRTRFQCPACKKVFRSYQALGGHR-----ASHVRGGRGGCCAPPV 233
>02_01_0485 +
3487578-3487635,3488281-3488399,3488600-3488698,
3488795-3488851,3488954-3489109,3489227-3489311,
3489489-3489579,3489693-3489857,3489923-3490045,
3490244-3490319,3490486-3490633,3490769-3491934,
3492041-3492231,3492321-3492513
Length = 908
Score = 27.1 bits (57), Expect = 3.8
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 4 PLWSLWSVRTLRTMRPLPKPVPMPMSKP 87
P SLW + L T P P P+ + +P
Sbjct: 356 PRVSLWEIEPLTTFPMYPSPFPLRLKRP 383
>12_01_0442 + 3495333-3496484
Length = 383
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +1
Query: 19 WSVRTLRTMRPLPKPVPMPMSKPAKE 96
W+ R L RP P P P P P KE
Sbjct: 61 WAFR-LPVFRPPPPPPPPPAKNPVKE 85
>03_02_0474 -
8759585-8759626,8759753-8759893,8760001-8760093,
8760194-8760352
Length = 144
Score = 26.2 bits (55), Expect = 6.6
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = +1
Query: 187 QRHGGCQGDPVTDQLVP 237
+RH C+G+P T++ +P
Sbjct: 111 ERHASCKGNPATNEWIP 127
>09_03_0061 -
11967727-11967765,11967872-11967910,11967996-11968284,
11968367-11968515,11968693-11969469
Length = 430
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 46 RPLPKPVPMPMSKPAKEM*ISHLSSMQLSRSYET*GAEER 165
RPL +P P + PA++ H S + Y+T E+R
Sbjct: 89 RPLKRPASAPSAPPAQD---RHAQSYDVQLQYDTDFGEDR 125
>06_03_1054 + 27230571-27230879
Length = 102
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 74 GMGTGLGKGRMVRKVRTDHR 15
G G GL GR+VRK+R R
Sbjct: 15 GRGCGLALGRLVRKLRRQSR 34
>01_05_0230 + 19543410-19543722,19544165-19544238
Length = 128
Score = 25.8 bits (54), Expect = 8.7
Identities = 21/69 (30%), Positives = 27/69 (39%)
Frame = +1
Query: 46 RPLPKPVPMPMSKPAKEM*ISHLSSMQLSRSYET*GAEERGKELVSHQRHGGCQGDPVTD 225
R P P P P S P + LSS + R E G+ G R GG P
Sbjct: 56 RRRPSPPPAPPSTPPPASPPTPLSSTESGRRGEGRGSNAAGGSRRRRVR-GGPHKVPPAK 114
Query: 226 QLVPPSKLN 252
++PP K +
Sbjct: 115 IILPPFKFD 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,217,532
Number of Sequences: 37544
Number of extensions: 139827
Number of successful extensions: 722
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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