Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2h05
         (335 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    27   2.5  
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z68217-1|CAA92465.1|  461|Caenorhabditis elegans Hypothetical pr...    27   4.4  
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical...    27   4.4  
AL032643-5|CAA21656.1|  622|Caenorhabditis elegans Hypothetical ...    27   4.4  
AC084154-11|AAK29874.1|  350|Caenorhabditis elegans Hypothetical...    27   4.4  
L07144-9|AAK21441.1|  737|Caenorhabditis elegans Hypothetical pr...    26   5.8  
Z72501-1|CAA96582.1|  584|Caenorhabditis elegans Hypothetical pr...    26   7.7  

>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 46  RPLPKPVPMPMSKPAKE 96
           +P+P P PMP SKP  E
Sbjct: 85  KPMPFPKPMPKSKPKSE 101



 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 46  RPLPKPVPMPMSKPAKE 96
           +P+P P PMP SKP  E
Sbjct: 149 KPMPFPKPMPKSKPKSE 165


>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein
            F15D4.7 protein.
          Length = 2268

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 7    LWSLWSVRTLRTMRPL 54
            LW LWS+R L T+R L
Sbjct: 2018 LWKLWSLRYLSTLREL 2033


>Z68217-1|CAA92465.1|  461|Caenorhabditis elegans Hypothetical
           protein F58G6.1 protein.
          Length = 461

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 22  SVRTLRTMRPLPKPVPMPMSKPAKEM 99
           S+R   +   LP PVP PM+KP + +
Sbjct: 274 SLRQTPSPSVLPSPVPAPMAKPRESV 299


>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
            protein F15D4.7 protein.
          Length = 2268

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 7    LWSLWSVRTLRTMRPL 54
            LW LWS+R L T+R L
Sbjct: 2018 LWKLWSLRYLSTLREL 2033


>AL032643-5|CAA21656.1|  622|Caenorhabditis elegans Hypothetical
           protein Y54E5A.7 protein.
          Length = 622

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 79  SKPAKEM*ISHLSSMQLSRSYET*GAEERGKELVSH 186
           +K  K + I+H S   L   Y T G + RG++LV++
Sbjct: 175 TKNGKHLGIAHTSPTALKELYPTVGFKTRGEKLVAN 210


>AC084154-11|AAK29874.1|  350|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.1 protein.
          Length = 350

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 49  PLPKPVPMPMSKPAKEM*ISHLS 117
           P PKP P P  KP  ++ + HLS
Sbjct: 315 PKPKPRPKPELKPNHKLKLKHLS 337


>L07144-9|AAK21441.1|  737|Caenorhabditis elegans Hypothetical
           protein R05D3.2 protein.
          Length = 737

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 16  LWSVRTLRTMRPLPKPVPMP 75
           L+S+  LR++RP+ K  PMP
Sbjct: 614 LYSLPVLRSLRPVRKDTPMP 633


>Z72501-1|CAA96582.1|  584|Caenorhabditis elegans Hypothetical
           protein C04C11.2 protein.
          Length = 584

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 154 AEERGKELVSHQRHGGCQGDPVTDQLVP 237
           A ER +ELV HQ H   +  P T  + P
Sbjct: 497 ARERIEELVEHQLHHSPEHSPATPTVEP 524


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,657,358
Number of Sequences: 27780
Number of extensions: 98019
Number of successful extensions: 474
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)