Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2h05
         (335 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   4.0  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    20   7.0  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    20   7.0  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    20   7.0  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    20   7.0  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    20   9.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   9.2  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 184 HQRHGGCQG 210
           HQR GGC G
Sbjct: 399 HQRIGGCNG 407


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +1

Query: 49  PLPKPVPMPM 78
           P+P PVP+P+
Sbjct: 112 PVPVPVPVPV 121


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +1

Query: 49  PLPKPVPMPM 78
           P+P PVP+P+
Sbjct: 112 PVPVPVPVPV 121


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +1

Query: 49  PLPKPVPMPM 78
           P+P PVP+P+
Sbjct: 112 PVPVPVPVPV 121


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +1

Query: 49  PLPKPVPMPM 78
           P+P PVP+P+
Sbjct: 345 PVPVPVPVPV 354


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = +1

Query: 49  PLPKPVPMPM 78
           P+P P+P+P+
Sbjct: 112 PVPVPIPVPV 121


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +1

Query: 22  SVRTLRTMRPLPKPVPMPMSKPAKEM 99
           S + L   +  P P P P+  P K +
Sbjct: 871 SQQPLNLSKKSPSPSPRPLVGPCKAL 896


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,429
Number of Sequences: 438
Number of extensions: 1153
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)