Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2h04
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    30   0.39 
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    28   1.6  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   2.8  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    27   2.8  
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    27   2.8  
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    26   4.8  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    26   4.8  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    26   6.4  
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    25   8.5  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    25   8.5  

>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
            Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 20/95 (21%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
 Frame = +1

Query: 241  LSNKEQTNMQRSLP--QNKEALLKSYTTRLKEDVKSMLENFEVRAGESLMKLVSDIKQYL 414
            +   E  +++RSL   +NK  ++KS ++ L+E ++ +  N E+    + ++ + +++  +
Sbjct: 842  IDESELNSVKRSLLKYENKLQIIKSSSSGLEEQMQRI--NSEISDKRNELESLEELQHEV 899

Query: 415  I--LNDFPSVNEAITQNSKLFRTKQQECDQKLMSL 513
               +     +NE       L   +++EC++K+ SL
Sbjct: 900  ATRIEQDAKINERNAAKRSLLLARKKECNEKIKSL 934


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -3

Query: 112 GAI*YTTRVE-CTYQDEKLEIITSNNMNLSKEHNEK 8
           GA  Y+  +E CTY DEK E+     M +  E  E+
Sbjct: 93  GAEKYSVTMEPCTYTDEKFEVFKKYQMQVHLEKEEE 128


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +1

Query: 376 SLMKLVSDIKQYL-ILNDFPSVNEAITQNSKLFRTKQQECDQKLMSLRDDIAADLYDLED 552
           SL KL+ DI      L DFPS++           T   E D  L +  D + +  YD E+
Sbjct: 354 SLWKLILDIAPDAGDLFDFPSLSSISKDLCVPIETPVSEIDISLTAYNDPVISPYYDTEE 413


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
 Frame = +1

Query: 229  SYAS-LSNKEQTNMQRSLPQNKEALLKSYTTRLKEDVKSMLENFEVRAGESLMKLVSDIK 405
            +Y+S LS+ E+ +++  L   K  LL    + L +D   +L    V    S +   + + 
Sbjct: 700  AYSSILSSIEEYHLRFGL---KLMLLWDCVSPLSDDGTLVLARVLVSHEVSRLTSEALLS 756

Query: 406  QYLILNDFPSVNEAITQNSKLFRTKQQECDQKLMSLRDDIAADLYDLEDEYFTSIYK 576
            +    N   SV E  ++  +    K    + K  S+ D  A  + +L  +YFT+IYK
Sbjct: 757  ELKSRNGNNSVEEGFSEEERSILLKLLSWNVKFCSISD--AGSVNNLLQQYFTAIYK 811


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 1   FFFFRYVLWISSC--YLMLLFLISHLGRYILLLLC 99
           F F+ YVLW+  C  YL   + +  +G   L ++C
Sbjct: 275 FCFYGYVLWLCWCTMYLTHHYFVDLVGGMCLAIIC 309


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +1

Query: 1   FFFFRYVLWISSCYLMLLFLISHLGRYIL 87
           FF  + +    +C+ ML+FL+ ++G +++
Sbjct: 223 FFLIKSISTYIACFAMLIFLLCNVGSHVV 251


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = -1

Query: 234 VAFNSFVSLFVIFSAVYNRDVTKQL 160
           V +++  ++  +FS VY+RDV+++L
Sbjct: 863 VGYSTMYTMLPVFSIVYDRDVSEKL 887


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 610 LKVNPLFN*FCMYLKLMIXVNTQICLXCLPTIKYKFGIALLK 735
           L++  LFN    + K  I V+T IC  C+  +    GIAL K
Sbjct: 648 LRLTQLFN----FSKKQIVVSTSICDPCIIVVFLGGGIALYK 685


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = +1

Query: 283 QNKEALLKSYTTRLKEDVKSMLENFEVRAGESLMKLVSDIKQYLILNDFPSVNEAITQNS 462
           +N  A+L S  T L   +  + E  ++    SL+K  S+        DFPS+   I   +
Sbjct: 74  ENGSAMLNSDITSLSNRIFKVEEKLDLIL--SLLKNSSEPLDRTERKDFPSLAMQIRDAN 131

Query: 463 KLFRTKQQECDQK 501
            L  TK +E  ++
Sbjct: 132 SLVNTKLKEYSRR 144


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 34/161 (21%), Positives = 62/161 (38%), Gaps = 5/161 (3%)
 Frame = +1

Query: 238 SLSNKEQTNMQRSLPQNKEAL---LKSYTTRLKEDVKSMLENFEVRAGESLMKLVSDIKQ 408
           +L NK+   M  S+PQNK +L   +  +T   ++ ++   +    R   +L  +  +   
Sbjct: 13  ALVNKDHALMFHSVPQNKNSLSVCVAEFTALSEKPLEGFRKISSHRIYGTLGLIELEGSN 72

Query: 409 YLILNDFPSVNEAITQNSKLFRTKQQECDQKLMSLRDDIAADLY--DLEDEYFTSIYK*M 582
           +L +    S    +    ++FR  +        S  D I  + Y  D+ D Y T      
Sbjct: 73  FLCVISGASEVARVRDKERVFRIMEVCFYSVNRSNWDHIRQENYSPDIPDGYDTDTQGYD 132

Query: 583 LIFYISEMFLKVNPLFN*FCMYLKLMIXVNTQICLXCLPTI 705
              Y +E F  +  L      Y  L   + T++ L    T+
Sbjct: 133 SYKYAAEPFSSLRKLLTNGSFYFSLDFDITTRLQLRTSQTM 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,620,800
Number of Sequences: 5004
Number of extensions: 47918
Number of successful extensions: 158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)