Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2h04
         (735 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0266 - 1758439-1758599,1758682-1758769,1759363-1759564,175...    35   0.058
07_03_0284 + 16249497-16249993,16250950-16251069,16251166-162512...    29   2.9  
08_01_0514 + 4481383-4481903,4482532-4484590,4485038-4485107,448...    29   5.1  

>02_01_0266 -
           1758439-1758599,1758682-1758769,1759363-1759564,
           1759664-1759800,1760169-1760268,1760350-1760522,
           1760797-1760941,1761018-1761139,1761225-1761470,
           1761962-1762182,1762278-1762338,1762409-1762487,
           1762572-1762651,1763221-1763292,1763382-1763449,
           1763550-1763588,1763828-1763903,1763992-1764006
          Length = 694

 Score = 35.1 bits (77), Expect = 0.058
 Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
 Frame = +1

Query: 250 KEQTNMQRSLPQNK--EALLKSYTTRLKEDVKSMLENFEVRAGESLMKLVSDI-KQYLIL 420
           KE  +++R L  N+  E LL+    +LK+++ ++    E R  ES  KL S + K++   
Sbjct: 393 KEIDDLERVLLSNRKQEGLLQEEIQKLKDEINNLNSYIESRKSES-SKLESALAKKHNDY 451

Query: 421 NDFPSVNEAITQNSKLFRTKQQECDQKLMSLRDDI 525
           ND     + + +  K F  ++ +   ++  L+DD+
Sbjct: 452 NDLRKQRDELQEERKSFWKEEADVTAEIDRLKDDL 486


>07_03_0284 +
           16249497-16249993,16250950-16251069,16251166-16251298,
           16251867-16252031,16253289-16253459
          Length = 361

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 586 IFYISEMFLKVNPLFN*FCMYLKLMIXVNTQICLXCLPTIKY 711
           ++++S +FL  +  F  FC+ L  +I +    CL C+  I Y
Sbjct: 204 LYWLSIVFLAFDVFFVVFCVALACVIGIAVCCCLPCIIAILY 245


>08_01_0514 + 4481383-4481903,4482532-4484590,4485038-4485107,
            4485434-4485660,4486238-4486324,4486408-4487114,
            4487206-4487270,4487323-4487837,4487898-4487991,
            4488116-4488398,4488494-4488689,4488913-4489254
          Length = 1721

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/40 (45%), Positives = 23/40 (57%)
 Frame = -2

Query: 416  IKYCLISDTSFISDSPALTSKFSNMLLTSSFNLVVYDLRS 297
            IK C + D   +SD+ ALT K S   + S  NL V D+RS
Sbjct: 1329 IKECFL-DLVHVSDTHALTLKNSICAVLSGNNLNVQDIRS 1367


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,485,304
Number of Sequences: 37544
Number of extensions: 230690
Number of successful extensions: 547
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)