Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2h04
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49073-2|CAA88887.1|  157|Caenorhabditis elegans Hypothetical pr...    45   5e-05
Z92777-8|CAJ58494.1|  293|Caenorhabditis elegans Hypothetical pr...    31   0.85 
Z66565-5|CAA91482.2|  766|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>Z49073-2|CAA88887.1|  157|Caenorhabditis elegans Hypothetical
           protein ZK970.3 protein.
          Length = 157

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
 Frame = +1

Query: 310 YTTRLKEDVKSMLENFEVRAGESLMKLVSDIKQYLILNDFPSVNEAITQ-NSKLFRTKQQ 486
           YTT+ +  V++ L    VRA + L+KL +D+K++LIL+DF  +   I Q  ++   T +Q
Sbjct: 69  YTTKNEMAVRAQLM---VRASDELLKLTADLKEFLILHDFHFLTHNIKQAEAQCEETLRQ 125

Query: 487 ECDQKLMSLRDDIAADLYDLEDEYFTSIY 573
           +  Q    L  +++  L+DLE E   + Y
Sbjct: 126 QSHQH-NCLDSEVSNILFDLEREIAENFY 153


>Z92777-8|CAJ58494.1|  293|Caenorhabditis elegans Hypothetical
           protein C17H1.13 protein.
          Length = 293

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 2/134 (1%)
 Frame = +1

Query: 175 ISIVDCRKYNKK*YE*IKSYASLSNKEQTNMQRSLPQNKEALLKSYTTRLKEDVKSMLEN 354
           I++ D +K N    E  ++   L  ++     RS  QN E    S   + KE+ +S +EN
Sbjct: 10  IALADKKKSNNSELENKRNELQLEEEQF----RSNIQNME---HSMRMQAKEEQRSDIEN 62

Query: 355 FEVRAGESLMKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQQECDQKLMSLRDDIAAD 534
            E+R  E + K    I    +        +++ +   + +TK +E D K+   + D+A  
Sbjct: 63  HELRKREIIEKHQETISN--LNRSMSEAEKSMREQKFIHQTKCEEIDLKMKLKQGDLAKA 120

Query: 535 LYD--LEDEYFTSI 570
           + +  LE++Y +++
Sbjct: 121 VRNDILEEKYNSTV 134


>Z66565-5|CAA91482.2|  766|Caenorhabditis elegans Hypothetical
           protein T04F8.6 protein.
          Length = 766

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/80 (23%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
 Frame = +1

Query: 106 LHHTVTNFVYKK*SNFRVELFCYISIVD---C--RKYNKK*YE*IKSYASLSNKEQTNMQ 270
           L  T+++ +     + R   FC  S+++   C  R++  +  E ++    ++N+ +  + 
Sbjct: 235 LESTLSHLLNNSQVSARAAFFCMKSLLENYRCTVREFEMR-CEHMQKQIHIANQRRNMLI 293

Query: 271 RSLPQNKEALLKSYTTRLKE 330
             L QN++++  SY  RLKE
Sbjct: 294 EELDQNQQSIEASYNNRLKE 313


>Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical protein
            D2045.2 protein.
          Length = 1792

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +1

Query: 241  LSNKEQTNMQRSLPQNKEALLKSYTTRLKEDVKSMLENFEVRAGESLMKLV 393
            L   +   M + +P+  EA+L     R+++DVK  +     RA +S+ KL+
Sbjct: 1146 LRGHDTVEMHKMIPEYLEAIL-----RVRDDVKESVREAADRAADSISKLI 1191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,164,920
Number of Sequences: 27780
Number of extensions: 257973
Number of successful extensions: 747
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)