Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2h01
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    29   0.88 
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo...    27   2.0  
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub...    27   3.5  
SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb...    26   4.7  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    26   6.2  
SPAC56F8.04c |coq2|ppt1|para-hydroxybenzoate--polyprenyltransfer...    25   8.2  

>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
 Frame = +2

Query: 227 IVKLEAQKTQALKDIETLAESQNKALDDPLTFIDDLRSGNIQFPAHQTISDLPNINWNEY 406
           +++LE Q T  L+ +++++ ++ K  ++ ++ +  L   NIQ       S+  ++   + 
Sbjct: 669 LIRLE-QLTNELESLKSISRNKEKKFEEAISSLQ-LEKSNIQLQLTSLTSER-SLALEKL 725

Query: 407 GIDVTDTIGASESKQCKEELDSSFKVRGRKFTDNKPETFN---QLWSCEEQ 550
             D+  ++  SE  + K+ELD S+K    +    K E  N   QL  C  Q
Sbjct: 726 N-DLEKSLVLSE--RSKDELDESYKSLQEQLASKKIEVQNVSSQLSICNSQ 773


>SPBC530.01 |gyp1||GTPase activating protein Gyp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 239 EAQKTQALKDIETLAESQNKALDDPLTFIDDLRS 340
           +++K+ ALK + +L    + A  DP+T +D  R+
Sbjct: 4   QSKKSSALKTLSSLWNGSSSATSDPVTVLDRSRT 37


>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
           subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 462

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +2

Query: 380 LPNINWNEYGIDVTDTIGASESKQCKEELDSSFKVRGRKFTDNKPETFNQL 532
           L  +NW +   + T+T+     +   E   +  K+R RK  + K  TFN+L
Sbjct: 251 LKTLNWYQV-TNPTETLSEYSVEDIPESELNEMKLRHRKRYETKKATFNRL 300


>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 436

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 392 NWNEYGIDVTDTIGASESKQCKEE 463
           +WN+Y  D+ ++I  + +K  KEE
Sbjct: 39  SWNKYACDIDESIILNNAKAIKEE 62


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 323 IDDLRSGNIQFPAHQTISDLPNIN 394
           +D+  SG+I FP  +T  +L NIN
Sbjct: 912 VDESNSGSIVFPKSKTSINLNNIN 935


>SPAC56F8.04c
           |coq2|ppt1|para-hydroxybenzoate--
           polyprenyltransferaseCoq2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 358

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 97  RALTVCYKVDVKINKHYILYVRRTSSKGYLV 5
           R  ++ YKVD+   K    + +R S+ GYLV
Sbjct: 311 RLSSMIYKVDLDDPKDCFRWFKRNSNTGYLV 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,406,787
Number of Sequences: 5004
Number of extensions: 40185
Number of successful extensions: 123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)