Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2h01
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97012-5|AAK39149.1|  515|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AL021481-4|CAA16335.1| 1083|Caenorhabditis elegans Hypothetical ...    29   4.4  
AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily a...    29   4.4  
AC024810-7|AAF60765.1|  297|Caenorhabditis elegans Hypothetical ...    29   4.4  

>U97012-5|AAK39149.1|  515|Caenorhabditis elegans Hypothetical
           protein C04E6.5 protein.
          Length = 515

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 112 HDLFTRALTVCYKVDVKINKHYILYVRRTSSKGYL 8
           HD ++    +C+  +   N HYI Y R  +   +L
Sbjct: 450 HDKYSLVAAICHLGETPTNGHYIAYTREDTENSWL 484


>AL021481-4|CAA16335.1| 1083|Caenorhabditis elegans Hypothetical
           protein Y43F4B.6 protein.
          Length = 1083

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +2

Query: 170 ESDHLALRGNKDYCKLLKYIVKLEAQKTQALKDIETLAESQNKALDDPLTFIDDLR 337
           ++D  AL G  D     + + +L+A+     K I    E++ KALD+   FI+ ++
Sbjct: 468 DNDETALGGQDDTIYDTERLPELQAELDDLEKQIAMKDENRQKALDEQRAFIEAMQ 523


>AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 123 protein.
          Length = 655

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
 Frame = -3

Query: 510 LLSVNFRPLTLKLESNSSLHCFDSLAPIV-----SVTSIPYSFQFILGKSEI 370
           ++ ++ +P ++K  S+SSL C DS  PI          I YS+     K++I
Sbjct: 222 IIRIDVKPRSIKHSSSSSLDCSDSAEPIAIDAKSESAEITYSYSIKWTKTDI 273


>AC024810-7|AAF60765.1|  297|Caenorhabditis elegans Hypothetical
           protein Y54E10A.10 protein.
          Length = 297

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 492 RPLTLKLESNSSLHCFDSLAPIVSVTSIPYSFQFILGKS 376
           +PLT K++ ++  H F+   PIV   S   +  F+LG +
Sbjct: 54  KPLTTKMDKHNPYHLFEDETPIVRAGSKFDTSLFVLGSN 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,040,565
Number of Sequences: 27780
Number of extensions: 217376
Number of successful extensions: 621
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)