Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2g24
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    29   0.88 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   3.6  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    25   8.2  

>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +1

Query: 451 FKPNIEQENSHTLLESELEDVILQIETGKFVSEIADRQIIVLHARSYS 594
           + P I + N  T L S L D I  +++   +SE     II   +R+YS
Sbjct: 361 YPPQIVEGNYDTRLPSALPDEIHNVDSSVIISEATFVNIITKVSRAYS 408


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 19/56 (33%), Positives = 30/56 (53%)
 Frame = -1

Query: 587  LLACSTIICLSAISLTNLPVSICNITSSNSLSKSVCEFSCSILGLNTFIVDSSANN 420
            + + S +   +AI+ +++  S   ITSS+ L+ S    S SIL  +T I  SS  N
Sbjct: 3084 ITSSSVLNSSTAITSSSIVNSSTPITSSSVLNSSTAITSSSILNSSTPITSSSILN 3139


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/67 (20%), Positives = 32/67 (47%)
 Frame = +1

Query: 430 EESTIKVFKPNIEQENSHTLLESELEDVILQIETGKFVSEIADRQIIVLHARSYSIYQLL 609
           E+ T  V + +I   N HT L+  + D+ ++++      +     +++LH   +S+  +L
Sbjct: 412 EDRTSSVLEASIN--NIHTELQKWIADIPMELQWNTRSQKETSSTVLLLHMLYHSVIIIL 469

Query: 610 KQEGHTN 630
            +    N
Sbjct: 470 NRPSDDN 476


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,778,799
Number of Sequences: 5004
Number of extensions: 53420
Number of successful extensions: 144
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)