Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2g24
(719 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0590 - 20853040-20853081,20853694-20853918,20854995-208558... 29 2.8
01_06_1514 - 37892552-37893074,37893291-37893367,37893471-378935... 29 2.8
04_03_0795 - 19704354-19704464,19705152-19705214,19705298-197053... 29 3.7
05_05_0153 - 22766805-22767023,22767662-22767940,22768294-227684... 29 4.9
11_04_0418 - 17443989-17444082,17445153-17445406,17445709-174457... 28 6.5
04_03_0811 - 19909128-19912214 28 8.6
01_06_1238 + 35646647-35646932,35647333-35647950,35648732-356490... 28 8.6
>12_02_0590 -
20853040-20853081,20853694-20853918,20854995-20855886,
20856120-20856122,20856284-20856513
Length = 463
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/65 (24%), Positives = 32/65 (49%)
Frame = +1
Query: 343 ETVSGSQNAYSLKVDRFNSHSDSDCILLAEESTIKVFKPNIEQENSHTLLESELEDVILQ 522
+T+ N+ +VD FNS++ D E S ++ P+ E++ + + +EL+ +
Sbjct: 322 QTIDSQSNS---RVDTFNSNTSEDTTKSIEVSEVQRLHPDEEEKAENLVSHAELDTKVFS 378
Query: 523 IETGK 537
GK
Sbjct: 379 HVEGK 383
>01_06_1514 -
37892552-37893074,37893291-37893367,37893471-37893587,
37893826-37893926,37895077-37895146,37895318-37895415,
37896326-37896419,37896792-37896882,37897222-37897547,
37898193-37898278,37899078-37899417
Length = 640
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 457 PNIEQENSHTLLESELEDVILQIETGKFVSEIADRQIIVLHARSYSIYQLLKQEGHT-NA 633
PN NS LL E +D++ ++ KF+ I+ Q +R +L K H+ ++
Sbjct: 540 PNKASSNSSPLLTQEDQDMLRDVKYRKFIPGISKSQEFETKSRHSKQSRLSKSNSHSPSS 599
Query: 634 GEQNKL 651
G +L
Sbjct: 600 GNMKEL 605
>04_03_0795 - 19704354-19704464,19705152-19705214,19705298-19705378,
19705468-19705623,19705711-19705785,19706477-19706587,
19707206-19707304,19707453-19707546,19707779-19707838,
19709262-19709334,19711448-19711490,19711533-19711606,
19711985-19712075,19712170-19712214,19712533-19712589,
19713440-19713544,19713817-19713932,19714625-19714634,
19714810-19714920,19715502-19715594,19715664-19715690,
19715736-19715798,19716326-19716451,19716812-19716949,
19717164-19717832,19717949-19718123,19718269-19718450
Length = 1015
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = -1
Query: 560 LSAISLTNLPVSICNI---TSSNSLSKSVCEFSCSILGLNTFIVDSSANNI 417
L S++ LP + +I +N L KSV +FS ++GL T + ++I
Sbjct: 924 LCIFSISQLPKYVLDIHLGNLTNPLKKSVADFSALVIGLGTLLQQFGPSHI 974
>05_05_0153 -
22766805-22767023,22767662-22767940,22768294-22768401,
22768500-22768779,22768871-22769174,22769367-22769975,
22770186-22770411
Length = 674
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = -1
Query: 563 CLSA-ISLTNLPVSICNITSSNSLSKSV--CEFSCSILGLNTFIVDSSANNIQSLS 405
CL A + L +L + C++ N L KS CE LG + F+ D+ + +QS S
Sbjct: 515 CLEALVYLHHLNIVHCDLKPENILMKSYSRCEIKVIDLGSSCFLTDNLSLYVQSRS 570
>11_04_0418 -
17443989-17444082,17445153-17445406,17445709-17445783,
17446156-17446377,17446789-17446941,17447031-17447167,
17447615-17447933
Length = 417
Score = 28.3 bits (60), Expect = 6.5
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = +1
Query: 307 KYWWSTDSLHTKETVS-GSQNAYSLKVDRFNSHSDSDCILLAEESTIKVFKPNIEQEN-S 480
+YW ++ + + T S +NA +K DRF+ + + L E K+ IEQ S
Sbjct: 173 QYWTDVEATYNETTPSHRRRNAKQIK-DRFHKNEQNANRLKVLEIQQKLSSEKIEQAKIS 231
Query: 481 HTLLESELEDVILQIETGKFVSE 549
H + ++E +Q E K E
Sbjct: 232 HLAAKEQMEAAKVQREARKLEVE 254
>04_03_0811 - 19909128-19912214
Length = 1028
Score = 27.9 bits (59), Expect = 8.6
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Frame = -1
Query: 584 LACSTIICLSAISLTNLPVSICNITSSNSLS-------KSVCEFSCSILGLNTFIVDSS- 429
L+C +I+ LS L +LP S+ ++ + LS KS+C FS G NT +
Sbjct: 347 LSCLSILDLSYTPLESLPPSVWHLFNLRLLSLRGCTNLKSLCNFSNR--G-NTLSPNDKC 403
Query: 428 -ANNIQSLSL*ELNLSTFRL*AFWD 357
NN+ L L +LN++ F F D
Sbjct: 404 HVNNLLYLDLTQLNINIFPCDLFQD 428
>01_06_1238 +
35646647-35646932,35647333-35647950,35648732-35649032,
35649137-35649416,35649715-35649822,35650088-35650366,
35650805-35650963
Length = 676
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -1
Query: 563 CLSA-ISLTNLPVSICNITSSNSLSKSV--CEFSCSILGLNTFIVDSSANNIQSLS 405
CL A + L +L + C++ N L KS CE LG + F+ D+ +QS S
Sbjct: 537 CLEALVYLHHLRIIHCDLKPENILIKSYSRCEIKVIDLGSSCFLTDNLCLYVQSRS 592
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,312,855
Number of Sequences: 37544
Number of extensions: 287238
Number of successful extensions: 700
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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