Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2g24
(719 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF078785-4|AAC27089.3| 609|Caenorhabditis elegans Hypothetical ... 33 0.21
AF016677-4|AAL11109.2| 304|Caenorhabditis elegans Hypothetical ... 29 2.5
Z82272-3|CAB05215.1| 340|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z70782-2|CAA94839.1| 387|Caenorhabditis elegans Hypothetical pr... 28 5.8
U00033-15|AAC48298.2| 434|Caenorhabditis elegans Hypothetical p... 28 5.8
Z99283-1|CAB16536.2| 414|Caenorhabditis elegans Hypothetical pr... 28 7.7
U52003-5|AAG00057.1| 730|Caenorhabditis elegans P granule abnor... 28 7.7
U52003-4|ABB51171.1| 771|Caenorhabditis elegans P granule abnor... 28 7.7
AL110478-1|CAB54340.2| 537|Caenorhabditis elegans Hypothetical ... 28 7.7
AL110477-4|CAB54328.1| 309|Caenorhabditis elegans Hypothetical ... 28 7.7
AF077868-1|AAC36100.1| 730|Caenorhabditis elegans PGL-1 protein. 28 7.7
AF040645-6|AAB94976.1| 301|Caenorhabditis elegans Hypothetical ... 28 7.7
>AF078785-4|AAC27089.3| 609|Caenorhabditis elegans Hypothetical
protein C04E12.4 protein.
Length = 609
Score = 33.1 bits (72), Expect = 0.21
Identities = 23/96 (23%), Positives = 45/96 (46%)
Frame = +1
Query: 304 VKYWWSTDSLHTKETVSGSQNAYSLKVDRFNSHSDSDCILLAEESTIKVFKPNIEQENSH 483
+ W L TK + G N S K++ + + + I+ + ST + +P+ + + S
Sbjct: 382 ITLWKDISVLKTK--LKGVSNVESFKIEVYWTTTTPGSIVTTKSSTTPITEPDHQPDIST 439
Query: 484 TLLESELEDVILQIETGKFVSEIADRQIIVLHARSY 591
T L E + L+ ETG+ ++ I +++SY
Sbjct: 440 TPLTESYEIIQLKPETGRDYAKFTYDVISNTYSQSY 475
>AF016677-4|AAL11109.2| 304|Caenorhabditis elegans Hypothetical
protein ZK1240.3 protein.
Length = 304
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/73 (28%), Positives = 38/73 (52%)
Frame = +1
Query: 355 GSQNAYSLKVDRFNSHSDSDCILLAEESTIKVFKPNIEQENSHTLLESELEDVILQIETG 534
G N + K+ R S + I E S+ K ++ N+E+EN LL+S+ E++ ++E
Sbjct: 184 GKVNLHFKKLHRLLSDQEEAIIEKLELSSSKTYELNLEKENK--LLQSQ-EELAKKMERM 240
Query: 535 KFVSEIADRQIIV 573
K + D Q+ +
Sbjct: 241 KTRINLNDTQLFI 253
>Z82272-3|CAB05215.1| 340|Caenorhabditis elegans Hypothetical
protein F55G11.6 protein.
Length = 340
Score = 28.7 bits (61), Expect = 4.4
Identities = 27/110 (24%), Positives = 55/110 (50%), Gaps = 3/110 (2%)
Frame = +1
Query: 280 NITMSIFKVKYWWSTDSLHTKETV-SGSQNAYSLKVDRFNSHSDSDCILLAEESTIKVFK 456
N+T ++ + Y STD L T T + ++N YSL+ + + + K
Sbjct: 151 NVTSKVYAIDY-HSTDDLLTLMTFPADTKNYYSLRSALVFAGEGLSNYITNLYLLYQTKK 209
Query: 457 PNIEQENSHTLL--ESELEDVILQIETGKFVSEIADRQIIVLHARSYSIY 600
P I +++ T++ E+ + L I++ K+++ I +++ LH ++ SIY
Sbjct: 210 PWISSDDAITIVNFEAASSNDNLLIQSSKYLTGIG--EMVELHPQANSIY 257
>Z70782-2|CAA94839.1| 387|Caenorhabditis elegans Hypothetical
protein R04B5.3 protein.
Length = 387
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 361 QNAYSLKVDRFNSHSDSDCILLAEESTIKVFKPNIEQ-ENSHTLLESE 501
Q+ +++D + + + K+FKP++EQ +N H LL+SE
Sbjct: 236 QSGDYIQIDNLEEFFTDEQLKIDGTKLAKLFKPSLEQNDNFHKLLKSE 283
>U00033-15|AAC48298.2| 434|Caenorhabditis elegans Hypothetical
protein F37C12.13a protein.
Length = 434
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 412 DCILLAEESTIKVFK-PNIEQENSHTLLESELE 507
DC LA + ++ F+ PN+ E HTL+ SE E
Sbjct: 147 DCACLAAITALQHFRRPNVTLEPHHTLIYSEYE 179
>Z99283-1|CAB16536.2| 414|Caenorhabditis elegans Hypothetical
protein Y70C5C.2 protein.
Length = 414
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -1
Query: 575 STIICLSAISLTNLPVSICNITSSNSLSKSVCEFSCSILGLNTFIVD 435
STI+ I+ N P++ NITS N L ++ ++ +L N F D
Sbjct: 304 STIMSFGTITSPNFPMNYNNITSCNYLLTTLGSYNV-MLKFNKFYTD 349
>U52003-5|AAG00057.1| 730|Caenorhabditis elegans P granule
abnormality protein 1,isoform a protein.
Length = 730
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +1
Query: 325 DSLHTKETVSGSQNAYSL--KVDRFNSHSD--SDCILLAEESTIKVFKPNIEQENSHTLL 492
DS +TKE ++ N YS+ K N SD S +L+ + ++ + + + ++ +S TLL
Sbjct: 470 DSAYTKEEMTTVHNTYSVNTKAQVLNGLSDTNSSGLLVDSKDSLSLQEISCDEVDSSTLL 529
Query: 493 ES 498
S
Sbjct: 530 SS 531
>U52003-4|ABB51171.1| 771|Caenorhabditis elegans P granule
abnormality protein 1,isoform b protein.
Length = 771
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +1
Query: 325 DSLHTKETVSGSQNAYSL--KVDRFNSHSD--SDCILLAEESTIKVFKPNIEQENSHTLL 492
DS +TKE ++ N YS+ K N SD S +L+ + ++ + + + ++ +S TLL
Sbjct: 511 DSAYTKEEMTTVHNTYSVNTKAQVLNGLSDTNSSGLLVDSKDSLSLQEISCDEVDSSTLL 570
Query: 493 ES 498
S
Sbjct: 571 SS 572
>AL110478-1|CAB54340.2| 537|Caenorhabditis elegans Hypothetical
protein Y26D4A.2 protein.
Length = 537
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 310 YWWSTDSLHTKETVSGSQN-AYSLKVDRFNS 399
+WWS D++H E V S+N ++K+ NS
Sbjct: 227 WWWSIDNVHFLEKVHPSENKVMAIKIITSNS 257
>AL110477-4|CAB54328.1| 309|Caenorhabditis elegans Hypothetical
protein Y113G7B.6 protein.
Length = 309
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +1
Query: 394 NSHSDSDCILLA---EESTIKVFKPNIEQENSHTLLESELEDVILQI 525
+SH +S IL E ++VF PN + + L++ E+E +++I
Sbjct: 252 SSHFESGMILAEYEIEPEVVRVFDPNYNEAGNFDLVKCEIEKFLVKI 298
>AF077868-1|AAC36100.1| 730|Caenorhabditis elegans PGL-1 protein.
Length = 730
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +1
Query: 325 DSLHTKETVSGSQNAYSL--KVDRFNSHSD--SDCILLAEESTIKVFKPNIEQENSHTLL 492
DS +TKE ++ N YS+ K N SD S +L+ + ++ + + + ++ +S TLL
Sbjct: 470 DSAYTKEEMTTVHNTYSVNTKAQVLNGLSDTNSSGLLVDSKDSLSLQEISCDEVDSSTLL 529
Query: 493 ES 498
S
Sbjct: 530 SS 531
>AF040645-6|AAB94976.1| 301|Caenorhabditis elegans Hypothetical
protein F52C6.10 protein.
Length = 301
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 421 LLAEESTIKVFKPNIEQENSHTLLESELEDVILQIETGKF 540
++ E+T+K+ K + +Q S + DVIL IE KF
Sbjct: 117 IITVEATVKITKVSKKQLRSFDKSNKKFSDVILAIEDEKF 156
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,090,500
Number of Sequences: 27780
Number of extensions: 293850
Number of successful extensions: 722
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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