Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2g24
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.3  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    24   1.7  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   8.9  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   8.9  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 672 VHKKADSLTCGP 707
           VH++ D LTCGP
Sbjct: 125 VHERQDRLTCGP 136


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 259 ITPIHTKNITMSIFKVKYWW 318
           +T IH++N+T S+ KV Y W
Sbjct: 17  VTDIHSRNLTNSL-KVIYEW 35


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 584 LACSTIICLSAISLTNLPVSICNITSSNSLSKS 486
           L C  +  LS  +   +P S CN   +N+ S S
Sbjct: 143 LQCCGVHSLSDYNDKPIPASCCNSPENNTCSIS 175


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 331 LHTKETVSGSQNAYSLKVDRFNSHSDSDC 417
           +HT  T  G++   +L++D  N    S+C
Sbjct: 43  IHTVRTRGGNKKYRALRLDTGNFSWGSEC 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,222
Number of Sequences: 438
Number of extensions: 3458
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)