Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2g23
         (754 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0394 - 17633753-17636788                                         31   0.74 
02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,879...    30   2.3  

>07_03_0394 - 17633753-17636788
          Length = 1011

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -3

Query: 542 VGFRDAGSLIMSRVAPPNTAAPT-SCTIGKVAEYSHHPTRVRTVIENNINELFNGSYYFD 366
           +G  + G L  + + P  T     SC    VA+Y     R RT+++ N+N  FN  Y +D
Sbjct: 596 IGLLEVGILSANGLNPTKTKHERGSCDAYCVAKYGQKWVRTRTIVD-NLNPRFNEQYTWD 654


>02_01_0014 -
           87215-87280,87358-87495,87593-87721,87801-87869,
           87962-88042,88133-88237,88338-88568,88665-90197,
           90660-90752,91477-92887,93184-93305,93479-93718,
           94521-94682,94770-94937,95025-95141,95266-95376,
           95919-96506
          Length = 1787

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
 Frame = +2

Query: 551 SSGLHQLCMASRANIMYRVRTQQD--ALQAVPLIVTLASTYITYTL*YKYMNATLVGDAF 724
           S+G+ ++ +++ ANI  ++ +      ++AVPL+  L + + +  L +  +  T V +AF
Sbjct: 229 STGVQRVALSTAANICRKLPSDASEFVMEAVPLLTNLLNHHDSKVLEHASVCLTRVAEAF 288

Query: 725 AS 730
           AS
Sbjct: 289 AS 290


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,645,731
Number of Sequences: 37544
Number of extensions: 259045
Number of successful extensions: 452
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)