Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2g22
         (306 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0294 + 42571700-42573373,42573653-42573720,42573785-425738...    27   3.8  
02_04_0534 + 23725051-23726253                                         26   5.1  
03_05_0541 + 25381403-25382077,25382555-25383904,25386267-253864...    26   6.7  

>01_07_0294 +
           42571700-42573373,42573653-42573720,42573785-42573819,
           42573988-42574061,42574491-42574726,42574958-42575044,
           42575356-42575455,42575584-42576003
          Length = 897

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 157 QLSCRQRCPQRYHPGCYSV 213
           QL C   CP  +HP C ++
Sbjct: 539 QLLCCDTCPSTFHPDCLAI 557


>02_04_0534 + 23725051-23726253
          Length = 400

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +3

Query: 12  ITATTRKTHVAYGSKMALGFLLITGILAFGAYWTTKYLMSSPDNN 146
           +TA  R + +A+  + +  + L  G L   AY+  +YL  +P+++
Sbjct: 183 MTALVRASMIAFMDEFSRFYELADGTLQRAAYFLDRYLSVTPESD 227


>03_05_0541 +
           25381403-25382077,25382555-25383904,25386267-25386402,
           25386642-25387126
          Length = 881

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -3

Query: 214 LRYNSPGGS-VEDIVVGMTVVEEKLLSGLLIKYFVVQ*APNAKIPVISRNPNAILLP 47
           LRY   G S VE  +V M  ++E      + K  + Q APNA + V+   P A  LP
Sbjct: 493 LRYAEEGASSVEVYIVAMQALQEAANKVNMAKRGIGQVAPNAPLAVM---PIAAQLP 546


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,728,307
Number of Sequences: 37544
Number of extensions: 105816
Number of successful extensions: 184
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)