Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2g21
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   1.9  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    27   3.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   4.3  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   5.7  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   10.0 
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    25   10.0 

>SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 120

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 616 SPIIACFPILCPCFIACC 669
           S ++  F   CPCF++CC
Sbjct: 4   SGMLFIFATFCPCFLSCC 21


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 663 SYETRAQYREASYNGAKQKRAGNHAAREN 577
           S + R+++ E SY+    +R+GN A RE+
Sbjct: 15  SRDRRSRFTEDSYSRRDSQRSGNEAPRES 43


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = -1

Query: 300  CINCFKLYQ----NARICEFLACFHEISPSLLSSG 208
            C+ CF  Y+    +  +  F+ CFH+++   LS G
Sbjct: 2110 CVECFFKYKKDALHTLLPGFMRCFHKVAKEFLSLG 2144


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 38  LNKIKLNQYDNVHLKNQ*YKKKPLSYQMCLLVYILPLIVSPFLSCV 175
           L ++ L +Y  + +     K   +S   CLL Y++ L+V PF S +
Sbjct: 37  LMQLLLAKYYQIPIDLVGEKLSIVSASSCLLQYLVALVVVPFYSTI 82


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 314  YLRNVVLIVSSYIKMLVFVN 255
            +L NV +++S  + MLVFVN
Sbjct: 1268 HLNNVFIMISMQLLMLVFVN 1287


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 534 LYFGVQMD-FEQNVLYFPVLHGYLPVSA*PH 623
           +Y G Q D +   V+ + +L GYLP    PH
Sbjct: 688 MYAGTQADIWSCGVILYAMLAGYLPFDDDPH 718


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,526,894
Number of Sequences: 5004
Number of extensions: 49679
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)