Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2g21
(675 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC125198-1|AAI25199.1| 112|Homo sapiens keratin associated prot... 33 0.93
AB076360-1|BAD01547.1| 112|Homo sapiens keratin associated prot... 33 0.93
X54925-1|CAA38691.1| 469|Homo sapiens type I interstitial colla... 33 1.2
X05231-1|CAA28858.1| 469|Homo sapiens protein ( Human mRNA for ... 33 1.2
U78045-1|AAB36941.1| 469|Homo sapiens collagenase protein. 33 1.2
M15996-1|AAA35700.1| 69|Homo sapiens protein ( Human synovial ... 33 1.2
M13509-1|AAA35699.1| 469|Homo sapiens protein ( Human skin coll... 33 1.2
BT020147-1|AAV38949.1| 469|Homo sapiens matrix metalloproteinas... 33 1.2
BT006874-1|AAP35520.1| 469|Homo sapiens matrix metalloproteinas... 33 1.2
BC013875-1|AAH13875.1| 469|Homo sapiens matrix metallopeptidase... 33 1.2
AY769434-1|AAV28732.1| 469|Homo sapiens matrix metalloproteinas... 33 1.2
AK223281-1|BAD97001.1| 469|Homo sapiens matrix metalloproteinas... 33 1.2
AK223035-1|BAD96755.1| 469|Homo sapiens matrix metalloproteinas... 33 1.2
>BC125198-1|AAI25199.1| 112|Homo sapiens keratin associated protein
12-4 protein.
Length = 112
Score = 33.1 bits (72), Expect = 0.93
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Frame = +1
Query: 571 CCIFPCCMVTCPFLLSPIIACFPILC---PCFIACC 669
CC PC + C L C P C PC +ACC
Sbjct: 36 CCSAPCVALLCRPLCGVSTCCQPACCVPSPCQVACC 71
>AB076360-1|BAD01547.1| 112|Homo sapiens keratin associated protein
protein.
Length = 112
Score = 33.1 bits (72), Expect = 0.93
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Frame = +1
Query: 571 CCIFPCCMVTCPFLLSPIIACFPILC---PCFIACC 669
CC PC + C L C P C PC +ACC
Sbjct: 36 CCSAPCVALLCRPLCGVSTCCQPACCVPSPCQVACC 71
>X54925-1|CAA38691.1| 469|Homo sapiens type I interstitial
collagenase protein.
Length = 469
Score = 32.7 bits (71), Expect = 1.2
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +2
Query: 413 VVLCFDKVFSHQIKATIKTALKDVNLFEKYLKK 511
++L F V SH AT++T +DV+L +KYL+K
Sbjct: 8 LLLLFWGVVSHSFPATLETQEQDVDLVQKYLEK 40
>X05231-1|CAA28858.1| 469|Homo sapiens protein ( Human mRNA for
collagenase (E.C. 3.4.24). ).
Length = 469
Score = 32.7 bits (71), Expect = 1.2
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +2
Query: 413 VVLCFDKVFSHQIKATIKTALKDVNLFEKYLKK 511
++L F V SH AT++T +DV+L +KYL+K
Sbjct: 8 LLLLFWGVVSHSFPATLETQEQDVDLVQKYLEK 40
>U78045-1|AAB36941.1| 469|Homo sapiens collagenase protein.
Length = 469
Score = 32.7 bits (71), Expect = 1.2
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +2
Query: 413 VVLCFDKVFSHQIKATIKTALKDVNLFEKYLKK 511
++L F V SH AT++T +DV+L +KYL+K
Sbjct: 8 LLLLFWGVVSHSFPATLETQEQDVDLVQKYLEK 40
>M15996-1|AAA35700.1| 69|Homo sapiens protein ( Human synovial
cell collagenase mRNA. ).
Length = 69
Score = 32.7 bits (71), Expect = 1.2
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +2
Query: 413 VVLCFDKVFSHQIKATIKTALKDVNLFEKYLKK 511
++L F V SH AT++T +DV+L +KYL+K
Sbjct: 8 LLLLFWGVVSHSFPATLETQEQDVDLVQKYLEK 40
>M13509-1|AAA35699.1| 469|Homo sapiens protein ( Human skin
collagenase mRNA, complete cds. ).
Length = 469
Score = 32.7 bits (71), Expect = 1.2
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +2
Query: 413 VVLCFDKVFSHQIKATIKTALKDVNLFEKYLKK 511
++L F V SH AT++T +DV+L +KYL+K
Sbjct: 8 LLLLFWGVVSHSFPATLETQEQDVDLVQKYLEK 40
>BT020147-1|AAV38949.1| 469|Homo sapiens matrix metalloproteinase 1
(interstitial collagenase) protein.
Length = 469
Score = 32.7 bits (71), Expect = 1.2
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +2
Query: 413 VVLCFDKVFSHQIKATIKTALKDVNLFEKYLKK 511
++L F V SH AT++T +DV+L +KYL+K
Sbjct: 8 LLLLFWGVVSHSFPATLETQEQDVDLVQKYLEK 40
>BT006874-1|AAP35520.1| 469|Homo sapiens matrix metalloproteinase 1
(interstitial collagenase) protein.
Length = 469
Score = 32.7 bits (71), Expect = 1.2
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +2
Query: 413 VVLCFDKVFSHQIKATIKTALKDVNLFEKYLKK 511
++L F V SH AT++T +DV+L +KYL+K
Sbjct: 8 LLLLFWGVVSHSFPATLETQEQDVDLVQKYLEK 40
>BC013875-1|AAH13875.1| 469|Homo sapiens matrix metallopeptidase 1
(interstitial collagenase) protein.
Length = 469
Score = 32.7 bits (71), Expect = 1.2
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +2
Query: 413 VVLCFDKVFSHQIKATIKTALKDVNLFEKYLKK 511
++L F V SH AT++T +DV+L +KYL+K
Sbjct: 8 LLLLFWGVVSHSFPATLETQEQDVDLVQKYLEK 40
>AY769434-1|AAV28732.1| 469|Homo sapiens matrix metalloproteinase 1
(interstitial collagenase) protein.
Length = 469
Score = 32.7 bits (71), Expect = 1.2
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +2
Query: 413 VVLCFDKVFSHQIKATIKTALKDVNLFEKYLKK 511
++L F V SH AT++T +DV+L +KYL+K
Sbjct: 8 LLLLFWGVVSHSFPATLETQEQDVDLVQKYLEK 40
>AK223281-1|BAD97001.1| 469|Homo sapiens matrix metalloproteinase 1
preproprotein variant protein.
Length = 469
Score = 32.7 bits (71), Expect = 1.2
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +2
Query: 413 VVLCFDKVFSHQIKATIKTALKDVNLFEKYLKK 511
++L F V SH AT++T +DV+L +KYL+K
Sbjct: 8 LLLLFWGVVSHSFPATLETQEQDVDLVQKYLEK 40
>AK223035-1|BAD96755.1| 469|Homo sapiens matrix metalloproteinase 1
preproprotein variant protein.
Length = 469
Score = 32.7 bits (71), Expect = 1.2
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +2
Query: 413 VVLCFDKVFSHQIKATIKTALKDVNLFEKYLKK 511
++L F V SH AT++T +DV+L +KYL+K
Sbjct: 8 LLLLFWGVVSHSFPATLETQEQDVDLVQKYLEK 40
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,291,026
Number of Sequences: 237096
Number of extensions: 1532982
Number of successful extensions: 3643
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3559
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7615267504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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