Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2g20
(725 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 28 1.6
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 2.1
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 27 2.1
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|... 27 2.7
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos... 27 3.6
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 26 4.8
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 26 4.8
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual 26 6.3
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 25 8.3
SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr 2|||M... 25 8.3
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +3
Query: 204 KSKEFVRNKVVQPTSVLKPAEKIKLYNKE 290
KSKE +R+KV++ L AEK+K+Y +E
Sbjct: 51 KSKEIIRSKVIE---YLDRAEKLKVYLQE 76
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 225 NKVVQPTSVLKPAEKIKLYNKENKELFGPLLETSKQKK 338
++V PTS+L + +K+ NK F PL + K
Sbjct: 209 SRVKLPTSILSKSPPLKVPNKNRSSTFSPLRTPTSSSK 246
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 27.5 bits (58), Expect = 2.1
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = +3
Query: 69 SHQSNYTLLSVCTYLFSNILKQ*NIHYVVMFRPINKIGQIISFE---CKSKEFVRNKVVQ 239
S+ NY + +C +++ + NI+ +V +N + + E C + E + V
Sbjct: 200 SNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQIEELRCAACETMTEIV-- 257
Query: 240 PTSVLKPAEKIKLYNKENKELF 305
+KP EK+ L N N LF
Sbjct: 258 -NKKMKPLEKLNLLNILNLNLF 278
>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 162
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +3
Query: 24 DEELMIKLREVKSIRS 71
D+EL IKL+EV+SIRS
Sbjct: 109 DKELKIKLKEVESIRS 124
>SPCC1235.12c |mug146||meiotically upregulated gene
Mug46|Schizosaccharomyces pombe|chr 3|||Manual
Length = 311
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = -1
Query: 524 KNSKNIQTVPCILPHFVI*SLNHCTVCKRSNHSIINDKFHRIFFS 390
+N+ + V C L HF+ S N +V H H IFFS
Sbjct: 39 ENTNRLSEVQCKLTHFLSSSENSSSVRNTRTHK-FKQLLHYIFFS 82
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 26.2 bits (55), Expect = 4.8
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 196 SNVKVKNLSETKWYSPLLY*NRQKKLNCTIKKIRNYSV-RY*KLASKRNSEFKKKLKILR 372
SNV K+ E K PL N KK + + N S+ K K N +FK+ LK
Sbjct: 50 SNVVFKS-KEPKDNKPLDNKNDPKKTHNEDESHTNESLPSTDKKKKKDNDDFKQNLKSSS 108
Query: 373 NKTTER 390
NKT E+
Sbjct: 109 NKTEEK 114
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 3 IDSEKKTDEELMIKLREVKSIRSHQSNYTLL 95
++S++K + E L EVK+ RS +S TLL
Sbjct: 1295 LESKRKLEVEYQKVLEEVKTTRSLRSEVTLL 1325
>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 25.8 bits (54), Expect = 6.3
Identities = 16/62 (25%), Positives = 34/62 (54%)
Frame = +1
Query: 187 LYHSNVKVKNLSETKWYSPLLY*NRQKKLNCTIKKIRNYSVRY*KLASKRNSEFKKKLKI 366
+YH+ ++V + S+ + + L +K + T I YS+ + +L +RN++ + L +
Sbjct: 125 VYHNKLQVPSKSDMEIANSLKITQPAEKNSGTANPISAYSLEHAEL-DERNNQLSEALSM 183
Query: 367 LR 372
LR
Sbjct: 184 LR 185
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +3
Query: 147 YVVMFRPINKIGQIISFECKSKEFVRNKVVQPTSVLKPAEKIKLYNKENK 296
Y + R N +++ + K +R P+ L EK+KLYN++ K
Sbjct: 631 YRIQIRENNGYKRVLLDRLRKKAILR---AFPSRTLNRTEKVKLYNEDAK 677
>SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 228 KVVQPTSVLKPAEKIKLYNKENKELFGPLLETSK 329
KV +P + + P +++ N+E KEL L ET++
Sbjct: 81 KVEKPKAPISPKLDLRMLNQEEKELEELLDETTR 114
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,785,632
Number of Sequences: 5004
Number of extensions: 57312
Number of successful extensions: 162
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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